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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0050185 through 18771 annotations produced 1 hits


Annotation Number : CG30185
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050185
Gbrowse : chr2R:19431563-19432422 (+) // 100.0 //
Probeset : 1630451_at
Accessions : protein= NP_660194;, nucleotide= NM_145193;
Pathway : 0005875 // microtubule associated complex // inferred from direct assay
FlyMine data for FBgn0050185.
BDGP gene expression has embryonic in situ data for CG30185: 4 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0050185 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain234 54 of 4 2.00Up
Head101 84 of 4 0.90None
Eye120 44 of 4 1.03None
Thoracicoabdominal ganglion197 44 of 4 1.70Up
Salivary gland175 104 of 4 1.50Up
Crop74 24 of 4 0.60Down
Midgut177 134 of 4 1.50Up
Tubule33 21 of 4 0.30Down
Hindgut96 34 of 4 0.80None
Heart54 04 of 4 0.47Down
Fat body44 64 of 4 0.38Down
Ovary148 34 of 4 1.30None
Testis48 34 of 4 0.40Down
Male accessory glands484 184 of 4 4.10Up
Virgin spermatheca48 14 of 4 0.42Down
Mated spermatheca50 84 of 4 0.43Down
Adult carcass63 64 of 4 0.50Down
Larval CNS208 134 of 4 1.78Up
Larval Salivary gland296 84 of 4 2.53Up
Larval midgut105 74 of 4 0.90None
Larval tubule78 64 of 4 0.70Down
Larval hindgut118 44 of 4 1.01None
Larval fat body57 84 of 4 0.50Down
Larval trachea120 194 of 4 1.03None
Larval carcass170 104 of 4 1.45Up
S2 cells (growing)215 34 of 4 1.84Up
Whole fly117 114 of 4

Looking for FBgn0050185. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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