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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050196 through 18771 annotations produced 1 hits



(CG30196):

Annotation Number : CG30196
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050196
Gbrowse : chr2R:18542304-18542879 (-) // 100.0 //
Probeset : 1631548_at
Accessions : protein= NP_726220;, nucleotide= NM_166541;
FlyMine data for FBgn0050196.
VDRC has 3 RNAi stocks for FBgn0050196 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.10Down
Head12 ± 22 of 4 0.70None
Eye3 ± 21 of 4 0.19Down
Thoracicoabdominal ganglion6 ± 10 of 4 0.40Down
Salivary gland34 ± 44 of 4 1.91Up
Crop61 ± 34 of 4 3.50Up
Midgut22 ± 24 of 4 1.20None
Tubule13 ± 02 of 4 0.70Down
Hindgut87 ± 14 of 4 4.90Up
Heart144 ± 24 of 4 8.06Up
Fat body12 ± 43 of 4 0.70None
Ovary7 ± 03 of 4 0.40Down
Testis29 ± 14 of 4 1.60Up
Male accessory glands54 ± 24 of 4 3.00Up
Virgin spermatheca12 ± 14 of 4 0.69Down
Mated spermatheca12 ± 14 of 4 0.68Down
Adult carcass42 ± 44 of 4 2.40Up
Larval CNS58 ± 144 of 4 3.26Up
Larval Salivary gland131 ± 74 of 4 7.37Up
Larval midgut29 ± 14 of 4 1.66Up
Larval tubule12 ± 34 of 4 0.70None
Larval hindgut128 ± 174 of 4 7.20Up
Larval fat body91 ± 34 of 4 5.10Up
Larval trachea149 ± 484 of 4 8.35Up
Larval carcass509 ± 134 of 428.50Up
S2 cells (growing)9 ± 14 of 4 0.54Down
Whole fly17 ± 14 of 4

Looking for FBgn0050196. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime