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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050197 through 18771 annotations produced 1 hits



(CG30197):

Annotation Number : CG30197
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050197
Gbrowse : chr2R:10401538-10402500 (+) // 100.0 //
Probeset : 1634388_at
Accessions : protein= NP_725399;, nucleotide= NM_166058;
Pathway : 0005576 // extracellular region // inferred from electronic annotation
Interpro : 0030414 // peptidase inhibitor activity // inferred from electronic annotation
FlyMine data for FBgn0050197.
BDGP gene expression has embryonic in situ data for CG30197: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0050197 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1181 534 of 4 1.80Up
Head2825 1134 of 4 4.30Up
Eye2751 454 of 4 4.19Up
Thoracicoabdominal ganglion2178 944 of 4 3.30Up
Salivary gland3442 2084 of 4 5.24Up
Crop2523 434 of 4 3.80Up
Midgut1045 484 of 4 1.60Up
Tubule1021 704 of 4 1.60Up
Hindgut2911 424 of 4 4.40Up
Heart2354 1004 of 4 3.58Up
Fat body1663 374 of 4 2.53Up
Ovary92 54 of 4 0.10Down
Testis103 14 of 4 0.20Down
Male accessory glands227 334 of 4 0.30Down
Virgin spermatheca2618 1194 of 4 3.99Up
Mated spermatheca2369 1744 of 4 3.61Up
Adult carcass1797 264 of 4 2.70Up
Larval CNS545 524 of 4 0.83Down
Larval Salivary gland111 244 of 4 0.17Down
Larval midgut567 934 of 4 0.86None
Larval tubule13 12 of 4 0.00Down
Larval hindgut252 214 of 4 0.38Down
Larval fat body228 334 of 4 0.30Down
Larval trachea908 1234 of 4 1.38Up
Larval carcass2244 1544 of 4 3.42Up
S2 cells (growing)2 00 of 4 0.00Down
Whole fly657 254 of 4

Looking for FBgn0050197. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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