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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0050203 through 18771 annotations produced 1 hits


Annotation Number : CG30203
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050203
Gbrowse : chr2R:8198229-8201322 (+) // 100.0 //
Probeset : 1635396_at
Accessions : protein= NP_725128;, nucleotide= NM_165877;
Interpro : 0004867 // serine-type endopeptidase inhibitor activity // inferred from electronic annotation
FlyMine data for FBgn0050203.
TRiP has 1 RNAi stocks for FBgn0050203 available for purchase.
VDRC has 2 RNAi stocks for FBgn0050203 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 34 of 4 3.50Up
Head35 24 of 4 5.30Up
Eye74 84 of 411.14Up
Thoracicoabdominal ganglion21 14 of 4 3.20Up
Salivary gland11 10 of 4 1.67Up
Crop7 20 of 4 1.00None
Midgut11 00 of 4 1.70Up
Tubule5 00 of 4 0.90None
Hindgut5 10 of 4 0.90None
Heart9 14 of 4 1.44None
Fat body17 24 of 4 2.60Up
Ovary4 00 of 4 0.60None
Testis3 10 of 4 0.50Down
Male accessory glands4 10 of 4 0.60None
Virgin spermatheca20 23 of 4 3.06Up
Mated spermatheca21 13 of 4 3.16Up
Adult carcass25 22 of 4 3.80Up
Larval CNS79 54 of 411.85Up
Larval Salivary gland1 00 of 4 0.29Down
Larval midgut6 10 of 4 0.96None
Larval tubule5 00 of 4 0.80None
Larval hindgut4 10 of 4 0.61None
Larval fat body12 20 of 4 1.90None
Larval trachea4 20 of 4 0.64None
Larval carcass8 10 of 4 1.27None
S2 cells (growing)2 00 of 4 0.30Down
Whole fly6 00 of 4

Looking for FBgn0050203. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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