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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0050265 through 18771 annotations produced 1 hits


Annotation Number : CG30265
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050265
Gbrowse : chr2R:18719978-18722111 (+) // 100.0 //
Probeset : 1625077_at
Accessions : protein= NP_611721;, nucleotide= NM_137877;
FlyMine data for FBgn0050265.
BDGP gene expression has embryonic in situ data for CG30265: 4 pix of staining in 1 body parts.
Homophila reports that CG30265 is a close match (2e-54) to human gene SIASD;SLC17A5;SLD (NP_036566), a gene associated with Salla disease, 604369 (3);Sialic acid storage disorder, infantile, 269920 (3).
VDRC has 4 RNAi stocks for FBgn0050265 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 5.10None
Head1 00 of 4 4.50None
Eye1 00 of 4 3.50None
Thoracicoabdominal ganglion3 00 of 4 9.20None
Salivary gland11 33 of 432.07None
Crop2 10 of 4 6.80None
Midgut5 02 of 415.70Up
Tubule2 00 of 4 5.90None
Hindgut2 10 of 4 7.40None
Heart0 00 of 4 1.29None
Fat body7 42 of 421.00Up
Ovary1 00 of 4 2.90None
Testis1 00 of 4 2.90None
Male accessory glands2 00 of 4 6.10None
Virgin spermatheca5 01 of 414.86Up
Mated spermatheca3 11 of 411.21Up
Adult carcass2 10 of 4 7.80None
Larval CNS4 22 of 413.14Up
Larval Salivary gland3 10 of 4 8.50None
Larval midgut15 82 of 444.79None
Larval tubule2 00 of 4 7.40None
Larval hindgut1 00 of 4 5.00None
Larval fat body2 10 of 4 7.50None
Larval trachea2 10 of 4 7.14None
Larval carcass3 00 of 4 9.43Up
S2 cells (growing)0 00 of 4 2.79None
Whole fly0 00 of 4

Looking for FBgn0050265. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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