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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050278 through 18771 annotations produced 1 hits



(CG30278):

Annotation Number : CG30278
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050278
Gbrowse : chr2R:18105021-18106003 (-) // 100.0 //
Probeset : 1635435_at
Accessions : protein= NP_726180;, nucleotide= NM_166520;
FlyMine data for FBgn0050278.
BDGP gene expression has embryonic in situ data for CG30278: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0050278 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head6 ± 10 of 4 0.10Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.00Down
Salivary gland12 ± 30 of 4 0.12Down
Crop8 ± 21 of 4 0.10Down
Midgut3 ± 10 of 4 0.00Down
Tubule13 ± 11 of 4 0.10Down
Hindgut4 ± 10 of 4 0.00Down
Heart4 ± 10 of 4 0.04Down
Fat body10 ± 81 of 4 0.10Down
Ovary2 ± 10 of 4 0.00Down
Testis1195 ± 434 of 411.60Up
Male accessory glands7 ± 20 of 4 0.10Down
Virgin spermatheca12 ± 11 of 4 0.12Down
Mated spermatheca15 ± 23 of 4 0.15Down
Adult carcass13 ± 30 of 4 0.10Down
Larval CNS5 ± 31 of 4 0.05Down
Larval Salivary gland1 ± 00 of 4 0.02Down
Larval midgut2 ± 10 of 4 0.03Down
Larval tubule14 ± 01 of 4 0.10Down
Larval hindgut5 ± 01 of 4 0.05Down
Larval fat body77 ± 423 of 4 0.70None
Larval trachea6 ± 91 of 4 0.06Down
Larval carcass2 ± 00 of 4 0.02Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly102 ± 54 of 4

Looking for FBgn0050278. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime