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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050280 through 18771 annotations produced 1 hits



Fibrinogen-related protein (CG30280):

Annotation Number : CG30280
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050280
Gbrowse : chr2R:18001348-18002146 (+) // 100.0 //
Probeset : 1638128_at
Accessions : protein= NP_001163250; /// NP_611641;, nucleotide= NM_001169779; /// NM_137797;
Pathway : 0005615 // extracellular space // inferred from electronic annotation
Interpro : 0005102 // receptor binding // inferred from electronic annotation
FlyMine data for FBgn0050280.
Homophila reports that CG30280 is a close match (1e-29) to human gene FGG (NP_068656), a gene associated with Dysfibrinogenemia, gamma type (3);Hypofibrinogenemia, gamma type (3);Thrombophilia, dysfibrinogenemic (3).
VDRC has 2 RNAi stocks for FBgn0050280 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.10None
Head1 ± 00 of 4 0.20None
Eye0 ± 00 of 4 0.10None
Thoracicoabdominal ganglion0 ± 00 of 4 0.10None
Salivary gland2 ± 00 of 4 0.53None
Crop0 ± 00 of 4 0.10None
Midgut1 ± 10 of 4 0.30None
Tubule1 ± 00 of 4 0.30Down
Hindgut3 ± 10 of 4 0.70None
Heart48 ± 54 of 4 8.96Up
Fat body99 ± 394 of 418.41Up
Ovary0 ± 00 of 4 0.10None
Testis0 ± 00 of 4 0.20None
Male accessory glands1 ± 00 of 4 0.20None
Virgin spermatheca45 ± 34 of 4 8.43Up
Mated spermatheca58 ± 54 of 410.85Up
Adult carcass26 ± 43 of 4 4.80Up
Larval CNS0 ± 00 of 4 0.07None
Larval Salivary gland0 ± 00 of 4 0.07None
Larval midgut1 ± 00 of 4 0.23None
Larval tubule0 ± 00 of 4 0.10None
Larval hindgut0 ± 00 of 4 0.14None
Larval fat body1 ± 00 of 4 0.20None
Larval trachea0 ± 00 of 4 0.18None
Larval carcass1 ± 10 of 4 0.34None
S2 cells (growing)0 ± 00 of 4 0.08None
Whole fly5 ± 20 of 4

Looking for FBgn0050280. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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