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FlyAtlas: the Drosophila gene expression atlas

 University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0050284 through 18771 annotations produced 1 hits


(CG30284):

Annotation Number : CG30284
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050284
Gbrowse : chr2R:17538366-17539504 (-) // 100.0 //
Probeset : 1637741_a_at
Accessions : protein= NP_726096; /// NP_726097;, nucleotide= NM_166467; /// NM_166468;
FlyMine data for FBgn0050284.
BDGP gene expression has embryonic in situ data for CG30284: 6 pix of staining in 1 body parts.
VDRC has 1 RNAi stocks for FBgn0050284 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head1 ± 00 of 4 0.10Down
Eye3 ± 00 of 4 0.14Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland6 ± 20 of 4 0.26Down
Crop1 ± 00 of 4 0.10Down
Midgut8 ± 20 of 4 0.30Down
Tubule2 ± 00 of 4 0.10Down
Hindgut2 ± 00 of 4 0.10Down
Heart1 ± 10 of 4 0.07Down
Fat body3 ± 40 of 4 0.16Down
Ovary2 ± 00 of 4 0.10Down
Testis302 ± 114 of 412.30Up
Male accessory glands7 ± 20 of 4 0.30Down
Virgin spermatheca4 ± 20 of 4 0.19Down
Mated spermatheca4 ± 10 of 4 0.18Down
Adult carcass6 ± 10 of 4 0.30Down
Larval CNS0 ± 00 of 4 0.04Down
Larval Salivary gland3 ± 10 of 4 0.13Down
Larval midgut3 ± 10 of 4 0.12Down
Larval tubule3 ± 10 of 4 0.10Down
Larval hindgut3 ± 10 of 4 0.15Down
Larval fat body27 ± 143 of 4 1.10None
Larval trachea3 ± 10 of 4 0.16Down
Larval carcass4 ± 00 of 4 0.20Down
S2 cells (growing)2 ± 00 of 4 0.09Down
Whole fly24 ± 34 of 4

Looking for FBgn0050284. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime