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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050286 through 18771 annotations produced 1 hits



(CG30286):

Annotation Number : CG30286
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050286
Gbrowse : chr2R:17423279-17423945 (-) // 100.0 //
Probeset : 1631135_at
Accessions : protein= NP_001163239; /// NP_726082;, nucleotide= NM_001169768; /// NM_166460;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0050286.
VDRC has 3 RNAi stocks for FBgn0050286 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 2.20None
Head2 ± 00 of 4 1.60None
Eye3 ± 10 of 4 2.80None
Thoracicoabdominal ganglion1 ± 00 of 4 0.90None
Salivary gland25 ± 30 of 420.76Up
Crop11 ± 20 of 4 9.30Up
Midgut4 ± 20 of 4 4.00None
Tubule1 ± 00 of 4 1.40None
Hindgut5 ± 10 of 4 4.70Up
Heart4 ± 00 of 4 3.69Up
Fat body8 ± 60 of 4 7.10None
Ovary1 ± 00 of 4 0.80None
Testis2 ± 10 of 4 1.80None
Male accessory glands3 ± 20 of 4 3.20None
Virgin spermatheca2 ± 00 of 4 1.63None
Mated spermatheca4 ± 20 of 4 3.98None
Adult carcass2 ± 00 of 4 1.90None
Larval CNS1 ± 10 of 4 1.37None
Larval Salivary gland6 ± 10 of 4 5.39Up
Larval midgut3 ± 00 of 4 2.49Up
Larval tubule2 ± 10 of 4 1.70None
Larval hindgut4 ± 10 of 4 3.37None
Larval fat body68 ± 94 of 456.10Up
Larval trachea2 ± 20 of 4 1.65None
Larval carcass10 ± 20 of 4 8.94Up
S2 cells (growing)4 ± 20 of 4 3.37None
Whole fly1 ± 00 of 4

Looking for FBgn0050286. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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