Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050287 through 18771 annotations produced 2 hits



/// (CG30287 /// CG34166):

Annotation Number : CG15281
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085195
Gbrowse : chr2L:14743252-14743860 (+) // 100.0 //
Probeset : 1635548_s_at
Accessions : protein= NP_001097162; /// NP_001162980;, nucleotide= NM_001103692; /// NM_001169509;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0085195.
VDRC has 1 RNAi stocks for FBgn0085195 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain160 244 of 4 0.20Down
Head3207 3264 of 4 3.10Up
Eye1952 5014 of 4 1.89None
Thoracicoabdominal ganglion376 534 of 4 0.40Down
Salivary gland37 72 of 4 0.04Down
Crop241 534 of 4 0.20Down
Midgut11 22 of 4 0.00Down
Tubule151 224 of 4 0.10Down
Hindgut861 1204 of 4 0.80None
Heart5493 4394 of 4 5.32Up
Fat body4994 4884 of 4 4.84Up
Ovary10 14 of 4 0.00Down
Testis7 12 of 4 0.00Down
Male accessory glands19 12 of 4 0.00Down
Virgin spermatheca4608 744 of 4 4.47Up
Mated spermatheca4163 794 of 4 4.04Up
Adult carcass5811 2424 of 4 5.60Up
Larval CNS16 14 of 4 0.02Down
Larval Salivary gland2689 1994 of 4 2.61Up
Larval midgut23 54 of 4 0.02Down
Larval tubule825 1884 of 4 0.80None
Larval hindgut2412 3554 of 4 2.34Up
Larval fat body8114 8894 of 4 7.90Up
Larval trachea951 9124 of 4 0.92None
Larval carcass908 1574 of 4 0.88None
S2 cells (growing)3 00 of 4 0.00Down
Whole fly1031 2004 of 4



(CG30287):

Annotation Number : CG30287
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050287
Gbrowse : chr2R:17424484-17425506 (-) // 100.0 //
Probeset : 1627091_at
Accessions : protein= NP_726083;, nucleotide= NM_166461;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0050287.
Homophila reports that CG30287 is a close match (2e-12) to human gene MASP2 (NP_006601), a gene associated with MASP2 deficiency (3).
VDRC has 1 RNAi stocks for FBgn0050287 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 0.50Down
Head17 62 of 4 2.10None
Eye7 21 of 4 0.90None
Thoracicoabdominal ganglion8 11 of 4 1.00None
Salivary gland14 41 of 4 1.75None
Crop7 10 of 4 0.80None
Midgut14 11 of 4 1.70Up
Tubule5 00 of 4 0.60Down
Hindgut9 11 of 4 1.10None
Heart10 04 of 4 1.21None
Fat body22 34 of 4 2.67Up
Ovary4 10 of 4 0.60Down
Testis2 00 of 4 0.30Down
Male accessory glands12 10 of 4 1.40None
Virgin spermatheca15 24 of 4 1.83Up
Mated spermatheca11 13 of 4 1.34None
Adult carcass20 52 of 4 2.40None
Larval CNS4 20 of 4 0.53None
Larval Salivary gland5 10 of 4 0.62None
Larval midgut8 20 of 4 0.96None
Larval tubule15 42 of 4 1.80None
Larval hindgut5 10 of 4 0.59None
Larval fat body68 134 of 4 8.00Up
Larval trachea3 30 of 4 0.40None
Larval carcass5 10 of 4 0.63None
S2 cells (growing)6 00 of 4 0.72None
Whole fly8 01 of 4

Looking for FBgn0050287. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime