FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0050288 through 18771 annotations produced 1 hits

(CG30288):

Annotation Number : CG30288
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050288
Gbrowse : chr2R:17406839-17407479 (-) // 100.0 //
Probeset : 1622958_at
Accessions : protein= NP_001097398;, nucleotide= NM_001103928;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0050288.
Homophila reports that CG30288 is a close match (4e-11) to human gene FSAP;HABP2;HGFAL;PHBP (NP_004123), a gene associated with {Carotid stenosis, susceptibility to} (3);{Venous thromboembolism, susceptibility to}, 188050 (3).
VDRC has 3 RNAi stocks for FBgn0050288 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	1 ± 0	0 of 4	2.70	None
Head	2 ± 1	0 of 4	5.50	None
Eye	2 ± 1	0 of 4	6.53	None
Thoracicoabdominal ganglion	3 ± 1	1 of 4	7.90	None
Salivary gland	3 ± 1	0 of 4	10.07	None
Crop	2 ± 0	0 of 4	6.00	None
Midgut	1 ± 0	0 of 4	2.60	None
Tubule	2 ± 0	0 of 4	5.50	Up
Hindgut	1 ± 0	0 of 4	4.10	None
Heart	2 ± 0	0 of 4	7.40	None
Fat body	5 ± 5	0 of 4	13.33	None
Ovary	1 ± 0	0 of 4	2.70	None
Testis	1 ± 0	0 of 4	3.00	None
Male accessory glands	2 ± 1	0 of 4	6.50	None
Virgin spermatheca	2 ± 0	0 of 4	6.67	Up
Mated spermatheca	1 ± 0	0 of 4	3.67	None
Adult carcass	5 ± 4	0 of 4	14.20	None
Larval CNS	0 ± 1	0 of 4	2.40	None
Larval Salivary gland	17 ± 2	1 of 4	47.67	Up
Larval midgut	1 ± 0	0 of 4	2.67	None
Larval tubule	6 ± 2	0 of 4	16.90	None
Larval hindgut	7 ± 1	1 of 4	19.73	Up
Larval fat body	339 ± 31	4 of 4	904.30	Up
Larval trachea	2 ± 1	1 of 4	7.07	None
Larval carcass	6 ± 1	2 of 4	16.27	Up
S2 cells (growing)	2 ± 0	0 of 4	6.33	None
Whole fly	0 ± 0	0 of 4

Looking for FBgn0050288. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720