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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050290 through 18771 annotations produced 1 hits



/// CG30290 (CG42496 /// Ppcdc):

Annotation Number : CG30290
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050290 /// FBgn0260222
Gbrowse : chr2R:17579094-17580277 (+) // 100.0 //
Probeset : 1625725_at
Accessions : protein= NP_001163243; /// NP_726105;, nucleotide= NM_001169772; /// NM_166475;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004633 // phosphopantothenoylcysteine decarbox
FlyMine data for FBgn0050290 /// FBgn0260222.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain233 ± 44 of 4 1.10Up
Head173 ± 84 of 4 0.80Down
Eye166 ± 64 of 4 0.81Down
Thoracicoabdominal ganglion226 ± 174 of 4 1.10None
Salivary gland246 ± 174 of 4 1.20None
Crop573 ± 164 of 4 2.80Up
Midgut249 ± 54 of 4 1.20Up
Tubule1328 ± 424 of 4 6.50Up
Hindgut478 ± 64 of 4 2.30Up
Heart221 ± 164 of 4 1.07None
Fat body209 ± 314 of 4 1.02None
Ovary250 ± 84 of 4 1.20Up
Testis163 ± 74 of 4 0.80Down
Male accessory glands92 ± 84 of 4 0.40Down
Virgin spermatheca157 ± 134 of 4 0.77Down
Mated spermatheca155 ± 64 of 4 0.75Down
Adult carcass263 ± 54 of 4 1.30Up
Larval CNS168 ± 84 of 4 0.82Down
Larval Salivary gland100 ± 124 of 4 0.49Down
Larval midgut145 ± 144 of 4 0.71Down
Larval tubule827 ± 244 of 4 4.00Up
Larval hindgut205 ± 124 of 4 1.00None
Larval fat body125 ± 84 of 4 0.60Down
Larval trachea126 ± 74 of 4 0.62Down
Larval carcass117 ± 124 of 4 0.57Down
S2 cells (growing)201 ± 144 of 4 0.98None
Whole fly205 ± 64 of 4

Looking for FBgn0050290. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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