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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050295 through 18771 annotations produced 1 hits



Ipk1 (Ipk1):

Annotation Number : CG30295
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050295
Gbrowse : chr2R:16758310-16765973 (+) // 100.0 //
Probeset : 1641161_at
Accessions : protein= NP_001097387; /// NP_611522;, nucleotide= NM_001103917; /// NM_137678;
Interpro : 0000166 // nucleotide binding // inferred from electronic annotation /// 0005524 // ATP binding // inferred from electro
FlyMine data for FBgn0050295.
BDGP gene expression has embryonic in situ data for CG30295: 4 pix of staining in 1 body parts.
BioGrid reports that CG30295 interacts with CG7928 .
TRiP has 1 RNAi stocks for FBgn0050295 available for purchase.
VDRC has 3 RNAi stocks for FBgn0050295 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 11 of 4 0.80None
Head8 12 of 4 0.90None
Eye50 34 of 4 5.05Up
Thoracicoabdominal ganglion6 22 of 4 0.70None
Salivary gland16 52 of 4 1.66None
Crop10 23 of 4 1.10None
Midgut8 12 of 4 0.90None
Tubule8 02 of 4 0.80Down
Hindgut9 12 of 4 0.90None
Heart5 11 of 4 0.55None
Fat body6 22 of 4 0.62None
Ovary8 13 of 4 0.90None
Testis3 00 of 4 0.30None
Male accessory glands5 10 of 4 0.60None
Virgin spermatheca2 00 of 4 0.21None
Mated spermatheca5 00 of 4 0.50None
Adult carcass10 22 of 4 1.10None
Larval CNS13 04 of 4 1.33None
Larval Salivary gland4 10 of 4 0.49None
Larval midgut9 14 of 4 0.93None
Larval tubule43 54 of 4 4.40Up
Larval hindgut8 04 of 4 0.81None
Larval fat body14 13 of 4 1.50None
Larval trachea12 14 of 4 1.27None
Larval carcass5 10 of 4 0.53None
S2 cells (growing)12 14 of 4 1.29None
Whole fly9 21 of 4

Looking for FBgn0050295. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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