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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050296 through 18771 annotations produced 1 hits



(RIC-3):

Annotation Number : CG30296
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050296
Gbrowse : chr2R:16905289-16912415 (+) // 100.0 //
Probeset : 1639028_a_at
Accessions : protein= NP_001097389; /// NP_001097391; /// NP_001163221; /// NP_001163222; /// NP_001163223; /// NP_001163224; /// NP_001163225; /// NP_001163226; /// NP_001163227; /// NP_001163228; /// NP_001163229; /// NP_001163230; /// NP_611537; /// NP_726018; /// NP_995910;, nucleotide= NM_001103919; /// NM_001103921; /// NM_001169750; /// NM_001169751; /// NM_001169752; /// NM_001169753; /// NM_001169754; /// NM_001169755; /// NM_001169756; /// NM_001169757; /// NM_001169758; /// NM_001169759; /// NM_137693; /// NM_166418; /// NM_206188;
Interpro : 0004872 // receptor activity // inferred from electronic annotation
FlyMine data for FBgn0050296.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1090 ± 94 of 4 2.40Up
Head932 ± 384 of 4 2.00Up
Eye702 ± 274 of 4 1.54Up
Thoracicoabdominal ganglion1104 ± 264 of 4 2.40Up
Salivary gland15 ± 32 of 4 0.03Down
Crop1656 ± 254 of 4 3.60Up
Midgut47 ± 24 of 4 0.10Down
Tubule14 ± 22 of 4 0.00Down
Hindgut1161 ± 404 of 4 2.50Up
Heart1245 ± 1154 of 4 2.73Up
Fat body56 ± 174 of 4 0.12Down
Ovary10 ± 14 of 4 0.00Down
Testis20 ± 34 of 4 0.00Down
Male accessory glands97 ± 34 of 4 0.20Down
Virgin spermatheca56 ± 64 of 4 0.12Down
Mated spermatheca81 ± 124 of 4 0.18Down
Adult carcass1118 ± 544 of 4 2.40Up
Larval CNS496 ± 134 of 4 1.09None
Larval Salivary gland6 ± 11 of 4 0.01Down
Larval midgut31 ± 34 of 4 0.07Down
Larval tubule13 ± 23 of 4 0.00Down
Larval hindgut493 ± 154 of 4 1.08None
Larval fat body9 ± 20 of 4 0.00Down
Larval trachea86 ± 654 of 4 0.19Down
Larval carcass1692 ± 1164 of 4 3.71Up
S2 cells (growing)3 ± 11 of 4 0.01Down
Whole fly456 ± 604 of 4

Looking for FBgn0050296. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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