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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050325 through 18771 annotations produced 1 hits



(CG30325):

Annotation Number : CG30325
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050325
Gbrowse : chr2R:13765109-13767362 (-) // 100.0 //
Probeset : 1635115_at
Accessions : protein= NP_725733;, nucleotide= NM_166259;
FlyMine data for FBgn0050325.
VDRC has 2 RNAi stocks for FBgn0050325 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.40Down
Head4 ± 10 of 4 0.40Down
Eye2 ± 00 of 4 0.26Down
Thoracicoabdominal ganglion2 ± 00 of 4 0.20Down
Salivary gland12 ± 10 of 4 1.25None
Crop2 ± 00 of 4 0.30Down
Midgut3 ± 20 of 4 0.40None
Tubule4 ± 00 of 4 0.40Down
Hindgut3 ± 00 of 4 0.30Down
Heart2 ± 00 of 4 0.26Down
Fat body5 ± 20 of 4 0.50Down
Ovary2 ± 10 of 4 0.20Down
Testis99 ± 54 of 4 9.80Up
Male accessory glands8 ± 21 of 4 0.90None
Virgin spermatheca7 ± 00 of 4 0.75None
Mated spermatheca7 ± 10 of 4 0.70None
Adult carcass11 ± 20 of 4 1.10None
Larval CNS1 ± 11 of 4 0.19Down
Larval Salivary gland6 ± 10 of 4 0.63None
Larval midgut4 ± 10 of 4 0.48Down
Larval tubule6 ± 21 of 4 0.60None
Larval hindgut2 ± 10 of 4 0.26Down
Larval fat body19 ± 81 of 4 1.90None
Larval trachea2 ± 20 of 4 0.20Down
Larval carcass6 ± 10 of 4 0.65None
S2 cells (growing)3 ± 00 of 4 0.32Down
Whole fly10 ± 12 of 4

Looking for FBgn0050325. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime