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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050334 through 18771 annotations produced 1 hits



(CG30334):

Annotation Number : CG30334
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050334
Gbrowse : chr2R:8328170-8328778 (-) // 100.0 //
Probeset : 1627880_at
Accessions : protein= NP_725170;, nucleotide= NM_165903;
FlyMine data for FBgn0050334.
VDRC has 4 RNAi stocks for FBgn0050334 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head1 00 of 4 0.00Down
Eye0 00 of 4 0.01Down
Thoracicoabdominal ganglion2 00 of 4 0.00Down
Salivary gland115 144 of 4 2.23Up
Crop1484 174 of 428.70Up
Midgut5 20 of 4 0.10Down
Tubule4 10 of 4 0.10Down
Hindgut116 34 of 4 2.20Up
Heart1 10 of 4 0.03Down
Fat body1 10 of 4 0.03Down
Ovary4 00 of 4 0.10Down
Testis559 434 of 410.80Up
Male accessory glands0 00 of 4 0.00Down
Virgin spermatheca0 00 of 4 0.01Down
Mated spermatheca1 00 of 4 0.02Down
Adult carcass4 10 of 4 0.10Down
Larval CNS0 00 of 4 0.01Down
Larval Salivary gland1 00 of 4 0.02Down
Larval midgut1 00 of 4 0.03Down
Larval tubule8 20 of 4 0.20Down
Larval hindgut81 144 of 4 1.56None
Larval fat body33 172 of 4 0.60None
Larval trachea3 20 of 4 0.07Down
Larval carcass1 00 of 4 0.03Down
S2 cells (growing)0 00 of 4 0.01Down
Whole fly51 34 of 4

Looking for FBgn0050334. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime