FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0050340 through 18771 annotations produced 2 hits

(CG30340):

Annotation Number : CG30340
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050340
Gbrowse : chr2R:5487413-5488636 (-) // 100.0 //
Probeset : 1626472_at
Accessions : protein= NP_724812;, nucleotide= NM_165686;
Pathway : 0016021 // integral to membrane // inferred from sequence or structural similarity /// 0016021 // integral to membrane /
Interpro : 0004930 // G-protein coupled receptor activity // inferred from sequence or structural similarity /// 0008188 // neurope
FlyMine data for FBgn0050340.
Homophila reports that CG30340 is a close match (3e-11) to human gene EDNRA (NP_001948), a gene associated with Migraine, resistance to, 157300 (3).
TRiP has 1 RNAi stocks for FBgn0050340 available for purchase.
VDRC has 2 RNAi stocks for FBgn0050340 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.30	None
Head	0 ± 0	0 of 4	0.30	None
Eye	1 ± 0	0 of 4	0.56	None
Thoracicoabdominal ganglion	0 ± 0	0 of 4	0.30	None
Salivary gland	1 ± 0	0 of 4	0.65	None
Crop	1 ± 0	0 of 4	0.40	None
Midgut	19 ± 3	2 of 4	6.90	Up
Tubule	14 ± 3	1 of 4	5.30	Up
Hindgut	2 ± 1	0 of 4	0.70	None
Heart	2 ± 0	0 of 4	0.78	None
Fat body	1 ± 0	0 of 4	0.36	None
Ovary	2 ± 1	0 of 4	0.90	None
Testis	0 ± 0	0 of 4	0.20	None
Male accessory glands	30 ± 3	3 of 4	10.80	Up
Virgin spermatheca	3 ± 1	0 of 4	1.11	None
Mated spermatheca	0 ± 0	0 of 4	0.32	None
Adult carcass	1 ± 0	0 of 4	0.50	None
Larval CNS	0 ± 0	0 of 4	0.27	None
Larval Salivary gland	1 ± 0	0 of 4	0.38	None
Larval midgut	15 ± 0	0 of 4	5.66	Up
Larval tubule	3 ± 1	0 of 4	1.20	None
Larval hindgut	0 ± 0	0 of 4	0.24	None
Larval fat body	2 ± 1	0 of 4	0.80	None
Larval trachea	0 ± 0	0 of 4	0.24	None
Larval carcass	3 ± 1	0 of 4	1.20	None
S2 cells (growing)	56 ± 2	4 of 4	20.34	Up
Whole fly	2 ± 1	0 of 4

(CG30340):

Annotation Number : CG30339
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr2R:5488664-5490406 (-) // 100.0 //
Probeset : 1637698_at
Accessions : protein= NP_724813;, nucleotide= NM_165687;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from ele
Interpro : 0004930 // G-protein coupled receptor activity // inferred from sequence similarity /// 0005215 // transporter activity
Homophila reports that CG30339 is a close match (1e-11) to human gene AVED;TTP1;TTPA (NP_000361), a gene associated with Ataxia with isolated vitamin E deficiency, 277460 (3).

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	0 ± 0	0 of 4	0.10	Down
Head	1 ± 0	0 of 4	0.10	Down
Eye	3 ± 1	0 of 4	0.31	Down
Thoracicoabdominal ganglion	1 ± 0	0 of 4	0.10	Down
Salivary gland	1 ± 0	0 of 4	0.13	Down
Crop	2 ± 1	0 of 4	0.20	Down
Midgut	56 ± 1	4 of 4	4.60	Up
Tubule	53 ± 3	3 of 4	4.40	Up
Hindgut	8 ± 0	0 of 4	0.70	None
Heart	1 ± 1	0 of 4	0.13	Down
Fat body	1 ± 1	0 of 4	0.12	Down
Ovary	1 ± 0	0 of 4	0.10	Down
Testis	2 ± 0	0 of 4	0.20	Down
Male accessory glands	52 ± 7	4 of 4	4.30	Up
Virgin spermatheca	2 ± 1	0 of 4	0.23	Down
Mated spermatheca	1 ± 1	0 of 4	0.14	Down
Adult carcass	2 ± 0	0 of 4	0.20	Down
Larval CNS	1 ± 1	0 of 4	0.11	Down
Larval Salivary gland	1 ± 0	0 of 4	0.14	Down
Larval midgut	59 ± 2	4 of 4	4.92	Up
Larval tubule	30 ± 1	4 of 4	2.50	Up
Larval hindgut	8 ± 1	2 of 4	0.66	None
Larval fat body	0 ± 0	0 of 4	0.10	Down
Larval trachea	2 ± 1	0 of 4	0.17	Down
Larval carcass	0 ± 0	0 of 4	0.06	Down
S2 cells (growing)	37 ± 2	4 of 4	3.13	Up
Whole fly	12 ± 1	3 of 4

Looking for FBgn0050340. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720