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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050343 through 18771 annotations produced 1 hits



(CG30343):

Annotation Number : CG30343
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050343
Gbrowse : chr2R:5139517-5140769 (+) // 100.0 //
Probeset : 1635364_at
Accessions : protein= NP_724774;, nucleotide= NM_165668;
FlyMine data for FBgn0050343.
VDRC has 2 RNAi stocks for FBgn0050343 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain76 ± 34 of 4 1.90Up
Head94 ± 184 of 4 2.40None
Eye146 ± 64 of 4 3.68Up
Thoracicoabdominal ganglion112 ± 144 of 4 2.80Up
Salivary gland101 ± 34 of 4 2.55Up
Crop111 ± 84 of 4 2.80Up
Midgut78 ± 44 of 4 2.00Up
Tubule36 ± 14 of 4 0.90Down
Hindgut38 ± 14 of 4 1.00None
Heart40 ± 24 of 4 1.02None
Fat body109 ± 274 of 4 2.75Up
Ovary78 ± 34 of 4 2.00Up
Testis11 ± 14 of 4 0.30Down
Male accessory glands40 ± 44 of 4 1.00None
Virgin spermatheca34 ± 24 of 4 0.85None
Mated spermatheca32 ± 24 of 4 0.81None
Adult carcass40 ± 24 of 4 1.00None
Larval CNS133 ± 124 of 4 3.34Up
Larval Salivary gland68 ± 44 of 4 1.72Up
Larval midgut48 ± 24 of 4 1.21None
Larval tubule68 ± 54 of 4 1.70Up
Larval hindgut54 ± 44 of 4 1.37None
Larval fat body58 ± 64 of 4 1.50None
Larval trachea51 ± 54 of 4 1.30Up
Larval carcass87 ± 64 of 4 2.19Up
S2 cells (growing)42 ± 04 of 4 1.07None
Whole fly39 ± 34 of 4

Looking for FBgn0050343. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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