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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050344 through 18771 annotations produced 1 hits



(CG30344):

Annotation Number : CG30344
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050344
Gbrowse : chr2R:5032753-5036019 (+) // 100.0 //
Probeset : 1631387_at
Accessions : protein= NP_724759;, nucleotide= NM_165655;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0050344.
BDGP gene expression has embryonic in situ data for CG30344: 18 pix of staining in 7 body parts.
BioGrid reports that CG30344 interacts with CG32581 CG8974 .
VDRC has 3 RNAi stocks for FBgn0050344 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain92 54 of 4 0.80Down
Head164 44 of 4 1.40Up
Eye172 74 of 4 1.42Up
Thoracicoabdominal ganglion91 44 of 4 0.80None
Salivary gland200 84 of 4 1.65Up
Crop222 124 of 4 1.80Up
Midgut184 114 of 4 1.50Up
Tubule1522 714 of 412.50Up
Hindgut241 74 of 4 2.00Up
Heart715 364 of 4 5.89Up
Fat body158 144 of 4 1.30Up
Ovary115 34 of 4 1.00None
Testis36 34 of 4 0.30Down
Male accessory glands1191 594 of 4 9.80Up
Virgin spermatheca395 274 of 4 3.26Up
Mated spermatheca544 384 of 4 4.48Up
Adult carcass151 64 of 4 1.20None
Larval CNS67 34 of 4 0.56Down
Larval Salivary gland181 134 of 4 1.50Up
Larval midgut836 1014 of 4 6.88Up
Larval tubule1228 654 of 410.10Up
Larval hindgut201 264 of 4 1.66None
Larval fat body211 284 of 4 1.70Up
Larval trachea114 154 of 4 0.95None
Larval carcass126 154 of 4 1.04None
S2 cells (growing)1478 74 of 412.17Up
Whole fly121 104 of 4

Looking for FBgn0050344. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime