FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0050345 through 18771 annotations produced 2 hits

(CG30345):

Annotation Number : CG30345
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050345
Gbrowse : chr2R:5036331-5038809 (+) // 100.0 //
Probeset : 1627500_at
Accessions : protein= NP_724760;, nucleotide= NM_165656;
Pathway : 0016020 // membrane // inferred from electronic annotation
Interpro : 0005215 // transporter activity // inferred from electronic annotation
FlyMine data for FBgn0050345.
TRiP has 1 RNAi stocks for FBgn0050345 available for purchase.
VDRC has 3 RNAi stocks for FBgn0050345 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	14 ± 0	2 of 4	0.50	Down
Head	36 ± 1	4 of 4	1.40	Up
Eye	31 ± 3	4 of 4	1.20	None
Thoracicoabdominal ganglion	11 ± 1	1 of 4	0.40	Down
Salivary gland	22 ± 6	0 of 4	0.84	None
Crop	15 ± 0	1 of 4	0.60	Down
Midgut	79 ± 2	4 of 4	3.00	Up
Tubule	20 ± 1	2 of 4	0.80	Down
Hindgut	83 ± 6	4 of 4	3.10	Up
Heart	39 ± 1	4 of 4	1.48	Up
Fat body	35 ± 5	4 of 4	1.33	Up
Ovary	10 ± 1	0 of 4	0.40	Down
Testis	11 ± 0	3 of 4	0.40	Down
Male accessory glands	118 ± 1	4 of 4	4.40	Up
Virgin spermatheca	32 ± 3	2 of 4	1.20	None
Mated spermatheca	27 ± 2	3 of 4	1.05	None
Adult carcass	63 ± 2	4 of 4	2.40	Up
Larval CNS	3 ± 2	0 of 4	0.13	Down
Larval Salivary gland	24 ± 1	4 of 4	0.92	None
Larval midgut	218 ± 29	4 of 4	8.22	Up
Larval tubule	54 ± 6	4 of 4	2.10	Up
Larval hindgut	94 ± 9	4 of 4	3.56	Up
Larval fat body	97 ± 7	4 of 4	3.70	Up
Larval trachea	9 ± 4	1 of 4	0.37	Down
Larval carcass	27 ± 9	4 of 4	1.05	None
S2 cells (growing)	68 ± 5	4 of 4	2.58	Up
Whole fly	26 ± 2	4 of 4

chr2RHet:30696-37111 (+) // 99.73 // /// chr3LHet:742023-748179 (+) // 90.11 // /// chr2R:5038861-5045274 (+) // 99.78 // /// chr2R:3703231-3709643 (+) // 99.72 // /// chr3R:16092292-16098706 (+) // 99.75 // /// chr3R:1271737-1278140 (+) // 99.56 // /// chr2L:21691881-21698294 (-) // 99.72 // /// chr3RHet:1175743-1182074 (-) // 98.46 // /// chrX:11429128-11435541 (-) // 99.75 // /// chr3R:96511-102924 (-) // 99.77 // ( /// /// ):

Annotation Number : U89994
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1633959_s_at
Accessions : protein= , nucleotide= NP_001097672; /// NP_649448; /// NP_730799;
Pathway : 0006810 // transport // inferred from electronic annotation /// 0055085 // transmembrane transport // inferred from elec
Interpro : 0016020 // membrane // inferred from electronic annotation
FlyMine data for full length.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	102 ± 3	4 of 4	0.60	Down
Head	790 ± 141	4 of 4	4.40	Up
Eye	488 ± 103	4 of 4	2.73	None
Thoracicoabdominal ganglion	45 ± 3	4 of 4	0.30	Down
Salivary gland	78 ± 5	4 of 4	0.44	Down
Crop	25 ± 1	4 of 4	0.10	Down
Midgut	295 ± 19	4 of 4	1.60	Up
Tubule	172 ± 11	4 of 4	1.00	None
Hindgut	184 ± 7	4 of 4	1.00	None
Heart	416 ± 4	4 of 4	2.32	Up
Fat body	1392 ± 107	4 of 4	7.77	Up
Ovary	7 ± 0	4 of 4	0.00	Down
Testis	18 ± 0	4 of 4	0.10	Down
Male accessory glands	112 ± 5	4 of 4	0.60	Down
Virgin spermatheca	862 ± 15	4 of 4	4.81	Up
Mated spermatheca	860 ± 91	4 of 4	4.80	Up
Adult carcass	409 ± 35	4 of 4	2.30	Up
Larval CNS	31 ± 4	4 of 4	0.17	Down
Larval Salivary gland	51 ± 5	4 of 4	0.29	Down
Larval midgut	45 ± 9	4 of 4	0.25	Down
Larval tubule	33 ± 4	4 of 4	0.20	Down
Larval hindgut	224 ± 39	4 of 4	1.25	None
Larval fat body	938 ± 71	4 of 4	5.20	Up
Larval trachea	23 ± 10	4 of 4	0.13	Down
Larval carcass	46 ± 6	4 of 4	0.26	Down
S2 cells (growing)	627 ± 6	4 of 4	3.50	Up
Whole fly	179 ± 9	4 of 4

Looking for FBgn0050345. 2 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720