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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050349 through 18771 annotations produced 1 hits



(CG30349):

Annotation Number : CG30349
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050349
Gbrowse : chr2R:4795024-4798390 (+) // 100.0 //
Probeset : 1633003_at
Accessions : protein= NP_610421;, nucleotide= NM_136577;
FlyMine data for FBgn0050349.
BDGP gene expression has embryonic in situ data for CG30349: 12 pix of staining in 17 body parts.
BioGrid reports that CG30349 interacts with CG3861 .
VDRC has 2 RNAi stocks for FBgn0050349 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain85 ± 44 of 4 0.40Down
Head93 ± 34 of 4 0.40Down
Eye88 ± 14 of 4 0.37Down
Thoracicoabdominal ganglion93 ± 34 of 4 0.40Down
Salivary gland149 ± 104 of 4 0.63Down
Crop115 ± 34 of 4 0.50Down
Midgut100 ± 84 of 4 0.40Down
Tubule114 ± 144 of 4 0.50Down
Hindgut94 ± 24 of 4 0.40Down
Heart96 ± 54 of 4 0.41Down
Fat body144 ± 204 of 4 0.60Down
Ovary425 ± 54 of 4 1.80Up
Testis54 ± 14 of 4 0.20Down
Male accessory glands242 ± 134 of 4 1.00None
Virgin spermatheca95 ± 74 of 4 0.40Down
Mated spermatheca141 ± 94 of 4 0.59Down
Adult carcass110 ± 84 of 4 0.50Down
Larval CNS308 ± 54 of 4 1.29None
Larval Salivary gland222 ± 44 of 4 0.93None
Larval midgut91 ± 94 of 4 0.38Down
Larval tubule71 ± 14 of 4 0.30Down
Larval hindgut161 ± 204 of 4 0.68Down
Larval fat body69 ± 34 of 4 0.30Down
Larval trachea308 ± 504 of 4 1.29None
Larval carcass252 ± 574 of 4 1.05None
S2 cells (growing)321 ± 64 of 4 1.35Up
Whole fly239 ± 224 of 4

Looking for FBgn0050349. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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