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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050354 through 18771 annotations produced 1 hits



Ubiquinol-cytochrome c reductase 11 kDa protein (CG30354):

Annotation Number : CG30354
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050354
Gbrowse : chr2R:4564831-4565147 (+) // 100.0 //
Probeset : 1628337_at
Accessions : protein= NP_724697;, nucleotide= NM_165616;
Pathway : ubiquinol to cytochrome c // inferred from electronic annotation /// 0055114 // oxidation reduction // inferred from el
Interpro : 0005750 // mitochondrial respiratory chain complex III // inferred from sequence or structural similarity
FlyMine data for FBgn0050354.
VDRC has 2 RNAi stocks for FBgn0050354 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain15 ± 14 of 4 0.20Down
Head7 ± 10 of 4 0.10Down
Eye9 ± 10 of 4 0.12Down
Thoracicoabdominal ganglion7 ± 20 of 4 0.10Down
Salivary gland21 ± 61 of 4 0.29Down
Crop11 ± 33 of 4 0.20Down
Midgut37 ± 04 of 4 0.50Down
Tubule14 ± 12 of 4 0.20Down
Hindgut15 ± 04 of 4 0.20Down
Heart33 ± 34 of 4 0.45Down
Fat body47 ± 74 of 4 0.63Down
Ovary2 ± 10 of 4 0.00Down
Testis917 ± 374 of 412.10Up
Male accessory glands12 ± 31 of 4 0.20Down
Virgin spermatheca38 ± 34 of 4 0.51Down
Mated spermatheca38 ± 54 of 4 0.50Down
Adult carcass13 ± 40 of 4 0.20Down
Larval CNS8 ± 23 of 4 0.12Down
Larval Salivary gland9 ± 20 of 4 0.12Down
Larval midgut46 ± 64 of 4 0.62Down
Larval tubule7 ± 10 of 4 0.10Down
Larval hindgut7 ± 10 of 4 0.10Down
Larval fat body118 ± 463 of 4 1.60None
Larval trachea17 ± 113 of 4 0.23Down
Larval carcass5 ± 10 of 4 0.07Down
S2 cells (growing)5 ± 00 of 4 0.07Down
Whole fly75 ± 24 of 4

Looking for FBgn0050354. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime