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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050359 through 18771 annotations produced 1 hits



(CG30359):

Annotation Number : CG30359
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050359
Gbrowse : chr2R:4350277-4352599 (+) // 100.0 //
Probeset : 1629903_at
Accessions : protein= NP_001163088; /// NP_610382;, nucleotide= NM_001169617; /// NM_136538;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0043169 // cation binding // inferred from elec
FlyMine data for FBgn0050359.
BDGP gene expression has embryonic in situ data for CG30359: 4 pix of staining in 1 body parts.
Homophila reports that CG30359 is a close match (3e-102) to human gene ATR1;D2H;NBAT;SLC3A1 (NP_000332), a gene associated with Cystinuria, 220100 (3);Homozygous 2p16 deletion syndrome, 606407 (3).
TRiP has 1 RNAi stocks for FBgn0050359 available for purchase.
VDRC has 3 RNAi stocks for FBgn0050359 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain453 ± 104 of 4 1.00None
Head572 ± 354 of 4 1.30Up
Eye376 ± 254 of 4 0.87None
Thoracicoabdominal ganglion593 ± 194 of 4 1.40Up
Salivary gland26 ± 20 of 4 0.06Down
Crop355 ± 34 of 4 0.80None
Midgut20 ± 13 of 4 0.00Down
Tubule17 ± 32 of 4 0.00Down
Hindgut72 ± 14 of 4 0.20Down
Heart673 ± 264 of 4 1.55Up
Fat body751 ± 244 of 4 1.73Up
Ovary430 ± 64 of 4 1.00None
Testis15 ± 14 of 4 0.00Down
Male accessory glands14 ± 20 of 4 0.00Down
Virgin spermatheca966 ± 324 of 4 2.23Up
Mated spermatheca763 ± 644 of 4 1.76Up
Adult carcass854 ± 144 of 4 2.00Up
Larval CNS152 ± 614 of 4 0.35Down
Larval Salivary gland104 ± 64 of 4 0.24Down
Larval midgut22 ± 40 of 4 0.05Down
Larval tubule47 ± 34 of 4 0.10Down
Larval hindgut147 ± 174 of 4 0.34Down
Larval fat body5692 ± 6094 of 413.10Up
Larval trachea47 ± 134 of 4 0.11Down
Larval carcass1179 ± 1074 of 4 2.72Up
S2 cells (growing)3 ± 00 of 4 0.01Down
Whole fly433 ± 304 of 4

Looking for FBgn0050359. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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