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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050361 through 18771 annotations produced 1 hits



chr2R:4361932-4409597 (-) // 100.0 // (mXr):

Annotation Number : CG30361
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1627933_a_at
Accessions : protein= , nucleotide= NP_001137619; /// NP_610386; /// NP_724683; /// NP_995780;
Pathway : 0007165 // signal transduction // inferred from electronic annotation /// 0007186 // G-protein coupled receptor protein
Interpro : 0005886 // plasma membrane // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic an
FlyMine data for full length.
Homophila reports that CG30361 is a close match (3e-48) to human gene CASR;FIH;HHC1;PCAR1 (NP_000379), a gene associated with Hyperparathyroidism, neonatal, 239200 (3);Hypocalcemia, autosomal dominant, 146200 (3);Hypocalcemia, autosomal dominant, with Bartter syndrome (3);Hypocalciuric hypercalcemia, type I, 145980 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain149 34 of 430.60Up
Head20 14 of 4 4.20Up
Eye7 03 of 4 1.48Up
Thoracicoabdominal ganglion108 64 of 422.30Up
Salivary gland15 20 of 4 3.19Up
Crop4 21 of 4 0.90None
Midgut7 02 of 4 1.60Up
Tubule2 00 of 4 0.60Down
Hindgut1 00 of 4 0.30Down
Heart0 00 of 4 0.15Down
Fat body8 24 of 4 1.76Up
Ovary0 00 of 4 0.10Down
Testis1 00 of 4 0.20Down
Male accessory glands4 10 of 4 0.90None
Virgin spermatheca5 03 of 4 1.07None
Mated spermatheca10 43 of 4 2.18None
Adult carcass9 21 of 4 1.90None
Larval CNS89 104 of 418.45Up
Larval Salivary gland1 00 of 4 0.33Down
Larval midgut5 00 of 4 1.19None
Larval tubule4 10 of 4 0.90None
Larval hindgut2 10 of 4 0.53None
Larval fat body5 20 of 4 1.00None
Larval trachea2 20 of 4 0.44None
Larval carcass2 10 of 4 0.47None
S2 cells (growing)1 00 of 4 0.26Down
Whole fly4 02 of 4

Looking for FBgn0050361. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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