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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050365 through 18771 annotations produced 2 hits



spacewatch (spaw):

Annotation Number : CG30365
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050365
Gbrowse : chr2R:4246452-4248695 (-) // 100.0 //
Probeset : 1637744_at
Accessions : protein= NP_724670;, nucleotide= NM_165602;
FlyMine data for FBgn0050365.
VDRC has 1 RNAi stocks for FBgn0050365 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.40None
Head2 10 of 4 0.70None
Eye2 00 of 4 0.87None
Thoracicoabdominal ganglion2 00 of 4 0.70None
Salivary gland3 00 of 4 0.88None
Crop1 00 of 4 0.40None
Midgut1 10 of 4 0.50None
Tubule2 00 of 4 0.70Down
Hindgut1 00 of 4 0.50None
Heart1 00 of 4 0.44None
Fat body1 00 of 4 0.35None
Ovary0 00 of 4 0.10None
Testis7 11 of 4 2.30None
Male accessory glands1 00 of 4 0.30None
Virgin spermatheca1 00 of 4 0.51None
Mated spermatheca2 10 of 4 0.73None
Adult carcass1 00 of 4 0.50None
Larval CNS0 00 of 4 0.13None
Larval Salivary gland5 10 of 4 1.46None
Larval midgut0 00 of 4 0.13None
Larval tubule2 10 of 4 0.80None
Larval hindgut1 00 of 4 0.47None
Larval fat body7 10 of 4 2.10None
Larval trachea0 00 of 4 0.24None
Larval carcass1 00 of 4 0.36None
S2 cells (growing)1 00 of 4 0.44None
Whole fly3 10 of 4



hug-bell /// spacewatch (hubl /// spaw):

Annotation Number : CG30364
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050364
Gbrowse : chr2R:4248727-4249661 (-) // 100.0 //
Probeset : 1641544_at
Accessions : protein= NP_724671;, nucleotide= NM_165603;
FlyMine data for FBgn0050364.
VDRC has 1 RNAi stocks for FBgn0050364 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head3 10 of 4 0.20Down
Eye0 00 of 4 0.05Down
Thoracicoabdominal ganglion1 10 of 4 0.10Down
Salivary gland6 30 of 4 0.42None
Crop1 10 of 4 0.10Down
Midgut2 10 of 4 0.10Down
Tubule3 00 of 4 0.20Down
Hindgut1 00 of 4 0.10Down
Heart4 10 of 4 0.26Down
Fat body4 00 of 4 0.32Down
Ovary0 00 of 4 0.00Down
Testis111 94 of 4 7.10Up
Male accessory glands2 00 of 4 0.10Down
Virgin spermatheca2 10 of 4 0.16Down
Mated spermatheca1 00 of 4 0.11Down
Adult carcass4 10 of 4 0.30Down
Larval CNS1 10 of 4 0.11Down
Larval Salivary gland6 10 of 4 0.44Down
Larval midgut1 00 of 4 0.09Down
Larval tubule0 00 of 4 0.10Down
Larval hindgut1 10 of 4 0.12Down
Larval fat body17 51 of 4 1.10None
Larval trachea1 10 of 4 0.13Down
Larval carcass0 00 of 4 0.06Down
S2 cells (growing)0 00 of 4 0.04Down
Whole fly15 12 of 4

Looking for FBgn0050365. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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