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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050374 through 18771 annotations produced 1 hits



(CR30374):

Annotation Number : CG30374
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050374
Gbrowse : chr2R:4044761-4045292 (-) // 100.0 //
Probeset : 1635835_at
Accessions : protein= NP_724652;, nucleotide= NM_165593;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0050374.
Homophila reports that CG30374 is a close match (5e-11) to human gene ENTK;PRSS7 (NP_002763), a gene associated with Enterokinase deficiency, 226200 (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.40None
Head2 ± 10 of 4 0.70None
Eye0 ± 00 of 4 0.17None
Thoracicoabdominal ganglion3 ± 10 of 4 1.00None
Salivary gland9 ± 30 of 4 2.97None
Crop1 ± 00 of 4 0.30None
Midgut11 ± 03 of 4 3.40Up
Tubule2 ± 00 of 4 0.80None
Hindgut2 ± 00 of 4 0.80None
Heart1 ± 00 of 4 0.37None
Fat body3 ± 30 of 4 0.99None
Ovary0 ± 00 of 4 0.30None
Testis5 ± 00 of 4 1.70None
Male accessory glands4 ± 20 of 4 1.40None
Virgin spermatheca4 ± 10 of 4 1.28None
Mated spermatheca5 ± 21 of 4 1.83None
Adult carcass1 ± 00 of 4 0.50None
Larval CNS0 ± 00 of 4 0.11None
Larval Salivary gland3 ± 10 of 4 1.07None
Larval midgut19 ± 24 of 4 6.08Up
Larval tubule2 ± 00 of 4 0.60None
Larval hindgut2 ± 10 of 4 0.82None
Larval fat body9 ± 01 of 4 2.90Up
Larval trachea3 ± 20 of 4 0.97None
Larval carcass2 ± 10 of 4 0.90None
S2 cells (growing)1 ± 00 of 4 0.44None
Whole fly3 ± 10 of 4

Looking for FBgn0050374. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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