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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050375 through 18771 annotations produced 1 hits



(CG30375):

Annotation Number : CG30375
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050375
Gbrowse : chr2R:4153386-4154787 (-) // 100.0 //
Probeset : 1631953_at
Accessions : protein= NP_724665;, nucleotide= NM_165600;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation /// 0004252 // serine-type endopeptidase activity /
FlyMine data for FBgn0050375.
Homophila reports that CG30375 is a close match (3e-11) to human gene KLK1;KLKR (NP_002248), a gene associated with [Kallikrein, decreased urinary activity of] (3).
VDRC has 4 RNAi stocks for FBgn0050375 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 12 of 4 0.90None
Head6 00 of 4 0.90None
Eye6 12 of 4 0.99None
Thoracicoabdominal ganglion5 21 of 4 0.70None
Salivary gland25 34 of 4 3.77Up
Crop3 00 of 4 0.50None
Midgut9 11 of 4 1.40None
Tubule6 10 of 4 1.00None
Hindgut9 12 of 4 1.40None
Heart3 00 of 4 0.55None
Fat body7 20 of 4 1.03None
Ovary3 00 of 4 0.50None
Testis33 64 of 4 4.90Up
Male accessory glands4 20 of 4 0.60None
Virgin spermatheca27 24 of 4 4.11Up
Mated spermatheca29 54 of 4 4.35Up
Adult carcass5 00 of 4 0.80None
Larval CNS3 10 of 4 0.47Down
Larval Salivary gland3 10 of 4 0.56None
Larval midgut9 13 of 4 1.42None
Larval tubule391 304 of 457.70Up
Larval hindgut5 00 of 4 0.82None
Larval fat body18 14 of 4 2.80Up
Larval trachea3 10 of 4 0.46Down
Larval carcass6 00 of 4 0.99None
S2 cells (growing)7 10 of 4 1.04None
Whole fly6 11 of 4

Looking for FBgn0050375. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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