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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0050377 through 18771 annotations produced 1 hits


Annotation Number : CG30377
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050377
Gbrowse : chr2R:3788457-3802515 (+) // 100.0 //
Probeset : 1625421_at
Accessions : protein= NP_610329;, nucleotide= NM_136485;
FlyMine data for FBgn0050377.
BDGP gene expression has embryonic in situ data for CG30377: 4 pix of staining in 1 body parts.
VDRC has 4 RNAi stocks for FBgn0050377 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 03 of 4 0.10Down
Head15 00 of 4 0.20Down
Eye13 23 of 4 0.15Down
Thoracicoabdominal ganglion22 04 of 4 0.20Down
Salivary gland11 30 of 4 0.13Down
Crop13 10 of 4 0.10Down
Midgut10 00 of 4 0.10Down
Tubule23 13 of 4 0.30Down
Hindgut27 34 of 4 0.30Down
Heart71 74 of 4 0.76None
Fat body25 30 of 4 0.27Down
Ovary259 104 of 4 2.80Up
Testis22 14 of 4 0.20Down
Male accessory glands9 20 of 4 0.10Down
Virgin spermatheca26 00 of 4 0.28Down
Mated spermatheca23 20 of 4 0.25Down
Adult carcass36 32 of 4 0.40Down
Larval CNS13 20 of 4 0.15Down
Larval Salivary gland11 00 of 4 0.12Down
Larval midgut12 21 of 4 0.14Down
Larval tubule5 10 of 4 0.10Down
Larval hindgut40 44 of 4 0.43Down
Larval fat body10 10 of 4 0.10Down
Larval trachea51 124 of 4 0.55Down
Larval carcass158 174 of 4 1.69Up
S2 cells (growing)25 13 of 4 0.27Down
Whole fly94 84 of 4

Looking for FBgn0050377. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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