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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0050378 through 18771 annotations produced 1 hits


/// (CG11165 /// CG30378):

Annotation Number : CG30378
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050378
Gbrowse : chr2R:3837843-3838598 (+) // 100.0 //
Probeset : 1640728_at
Accessions : protein= NP_724628;, nucleotide= NM_165575;
Interpro : 0005509 // calcium ion binding // inferred from sequence or structural similarity /// 0005509 // calcium ion binding //
FlyMine data for FBgn0050378.
Homophila reports that CG30378 is a close match (3e-11) to human gene CMD1Z;TNNC1 (NP_003271), a gene associated with Cardiomyopathy, dilated, 1Z, 611879 (3);Cardiomyopathy, familial hypertrophic, 192600 (3) (?).
VDRC has 2 RNAi stocks for FBgn0050378 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain5 ± 10 of 4 0.10Down
Head8 ± 10 of 4 0.10Down
Eye2 ± 10 of 4 0.04Down
Thoracicoabdominal ganglion5 ± 21 of 4 0.10Down
Salivary gland6 ± 30 of 4 0.09Down
Crop7 ± 10 of 4 0.10Down
Midgut8 ± 10 of 4 0.10Down
Tubule5 ± 10 of 4 0.10Down
Hindgut6 ± 10 of 4 0.10Down
Heart2 ± 00 of 4 0.04Down
Fat body10 ± 50 of 4 0.14Down
Ovary4 ± 10 of 4 0.10Down
Testis795 ± 264 of 410.80Up
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca4 ± 00 of 4 0.05Down
Mated spermatheca7 ± 20 of 4 0.09Down
Adult carcass10 ± 30 of 4 0.10Down
Larval CNS5 ± 12 of 4 0.07Down
Larval Salivary gland10 ± 22 of 4 0.14Down
Larval midgut8 ± 00 of 4 0.11Down
Larval tubule8 ± 10 of 4 0.10Down
Larval hindgut6 ± 12 of 4 0.08Down
Larval fat body65 ± 293 of 4 0.90None
Larval trachea1 ± 00 of 4 0.02Down
Larval carcass6 ± 11 of 4 0.09Down
S2 cells (growing)7 ± 10 of 4 0.10Down
Whole fly74 ± 14 of 4

Looking for FBgn0050378. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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