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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050379 through 18771 annotations produced 1 hits



(CG30379):

Annotation Number : CG30379
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050379
Gbrowse : chr2R:3827460-3829375 (+) // 100.0 //
Probeset : 1636927_at
Accessions : protein= NP_724626;, nucleotide= NM_165574;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0004972 // N-methyl-D-aspartate selective glutamate receptor activity // inferred from sequence or structural similarity
FlyMine data for FBgn0050379.
TRiP has 2 RNAi stocks for FBgn0050379 available for purchase.
VDRC has 2 RNAi stocks for FBgn0050379 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 10 of 4 1.20None
Head4 10 of 4 1.70None
Eye1 00 of 4 0.41None
Thoracicoabdominal ganglion4 10 of 4 1.50None
Salivary gland15 30 of 4 5.32Up
Crop2 00 of 4 0.90None
Midgut3 10 of 4 1.30None
Tubule4 00 of 4 1.60Up
Hindgut6 10 of 4 2.20None
Heart4 11 of 4 1.52None
Fat body5 40 of 4 1.93None
Ovary1 10 of 4 0.50None
Testis2 00 of 4 0.70None
Male accessory glands3 10 of 4 1.00None
Virgin spermatheca2 00 of 4 0.73None
Mated spermatheca2 10 of 4 0.95None
Adult carcass7 20 of 4 2.50None
Larval CNS82 124 of 428.22Up
Larval Salivary gland5 10 of 4 1.78None
Larval midgut5 10 of 4 1.72None
Larval tubule2 10 of 4 0.70None
Larval hindgut3 00 of 4 1.07None
Larval fat body3 10 of 4 1.30None
Larval trachea1 10 of 4 0.46None
Larval carcass2 20 of 4 1.00None
S2 cells (growing)2 10 of 4 0.95None
Whole fly2 10 of 4

Looking for FBgn0050379. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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