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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050382 through 18771 annotations produced 1 hits



/// 20s proteasome (CG30382 /// Prosalpha1):

Annotation Number : CG30382
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0026781 /// FBgn0050382
Gbrowse : chr2R:3718015-3719100 (-) // 100.0 // /// chr2R:3714905-3715990 (-) // 100.0 //
Probeset : 1633010_s_at
Accessions : protein= NP_001163078; /// NP_524837; /// NP_724614; /// NP_724616;, nucleotide= NM_001169607; /// NM_080098; /// NM_165565; /// NM_165567;
Pathway : "0000502 // proteasome complex // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic
Interpro : alpha-subunit complex // inferred from electronic annotation"
FlyMine data for FBgn0026781 /// FBgn0050382.
Homophila reports that CG30382 is a close match (9e-94) to human gene P27K;PROS27;PSMA6 (NP_002782), a gene associated with {Myocardial infarcation, susceptibility to} (3).


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain555 ± 134 of 4 0.30Down
Head1058 ± 494 of 4 0.60Down
Eye1036 ± 494 of 4 0.61Down
Thoracicoabdominal ganglion598 ± 234 of 4 0.40Down
Salivary gland1069 ± 504 of 4 0.63Down
Crop1725 ± 474 of 4 1.00None
Midgut1403 ± 514 of 4 0.80None
Tubule1055 ± 604 of 4 0.60Down
Hindgut1258 ± 264 of 4 0.70Down
Heart3352 ± 1834 of 4 1.98Up
Fat body2151 ± 2074 of 4 1.27Up
Ovary2198 ± 394 of 4 1.30Up
Testis1886 ± 354 of 4 1.10None
Male accessory glands1674 ± 1174 of 4 1.00None
Virgin spermatheca628 ± 274 of 4 0.37Down
Mated spermatheca660 ± 544 of 4 0.39Down
Adult carcass1947 ± 484 of 4 1.20None
Larval CNS1673 ± 434 of 4 0.99None
Larval Salivary gland2490 ± 994 of 4 1.47Up
Larval midgut1644 ± 1424 of 4 0.97None
Larval tubule3140 ± 804 of 4 1.90Up
Larval hindgut1811 ± 924 of 4 1.07None
Larval fat body1778 ± 1374 of 4 1.10None
Larval trachea2065 ± 2144 of 4 1.22None
Larval carcass2091 ± 1694 of 4 1.24None
S2 cells (growing)2108 ± 164 of 4 1.25Up
Whole fly1690 ± 1094 of 4

Looking for FBgn0050382. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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