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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050389 through 18771 annotations produced 1 hits



(CG30389):

Annotation Number : CG30389
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050389
Gbrowse : chr2R:17036236-17048050 (-) // 100.0 //
Probeset : 1637947_s_at
Accessions : protein= NP_611555; /// NP_611556;, nucleotide= NM_137711; /// NM_137712;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
FlyMine data for FBgn0050389.
BioGrid reports that CG30389 interacts with CG3847 .
VDRC has 2 RNAi stocks for FBgn0050389 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain510 94 of 4 5.40Up
Head131 104 of 4 1.40Up
Eye84 34 of 4 0.90None
Thoracicoabdominal ganglion366 94 of 4 3.90Up
Salivary gland108 144 of 4 1.15None
Crop96 24 of 4 1.00None
Midgut72 24 of 4 0.80Down
Tubule82 24 of 4 0.90Down
Hindgut69 34 of 4 0.70Down
Heart46 14 of 4 0.49Down
Fat body80 54 of 4 0.85None
Ovary189 74 of 4 2.00Up
Testis137 54 of 4 1.50Up
Male accessory glands90 24 of 4 1.00None
Virgin spermatheca43 24 of 4 0.46Down
Mated spermatheca47 34 of 4 0.50Down
Adult carcass74 74 of 4 0.80None
Larval CNS482 404 of 4 5.12Up
Larval Salivary gland82 44 of 4 0.88None
Larval midgut73 34 of 4 0.78Down
Larval tubule40 34 of 4 0.40Down
Larval hindgut74 54 of 4 0.80Down
Larval fat body72 74 of 4 0.80None
Larval trachea81 94 of 4 0.86None
Larval carcass116 44 of 4 1.24Up
S2 cells (growing)141 24 of 4 1.51Up
Whole fly94 44 of 4

Looking for FBgn0050389. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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