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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050390 through 18771 annotations produced 1 hits



(Sgf29):

Annotation Number : CG30390
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050390
Gbrowse : chr2R:17179818-17180981 (-) // 100.0 //
Probeset : 1623090_at
Accessions : protein= NP_726051;, nucleotide= NM_166436;
FlyMine data for FBgn0050390.
TRiP has 2 RNAi stocks for FBgn0050390 available for purchase.
VDRC has 3 RNAi stocks for FBgn0050390 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain130 84 of 4 1.50Up
Head65 64 of 4 0.80Down
Eye67 44 of 4 0.80Down
Thoracicoabdominal ganglion116 44 of 4 1.40Up
Salivary gland70 44 of 4 0.84Down
Crop64 14 of 4 0.80Down
Midgut54 44 of 4 0.60Down
Tubule74 44 of 4 0.90Down
Hindgut55 23 of 4 0.70Down
Heart34 34 of 4 0.40Down
Fat body24 51 of 4 0.29Down
Ovary153 84 of 4 1.80Up
Testis33 14 of 4 0.40Down
Male accessory glands56 53 of 4 0.70Down
Virgin spermatheca47 32 of 4 0.57Down
Mated spermatheca44 20 of 4 0.53Down
Adult carcass33 31 of 4 0.40Down
Larval CNS106 34 of 4 1.26Up
Larval Salivary gland62 34 of 4 0.75Down
Larval midgut44 53 of 4 0.52Down
Larval tubule75 34 of 4 0.90None
Larval hindgut35 33 of 4 0.42Down
Larval fat body42 44 of 4 0.50Down
Larval trachea65 134 of 4 0.78None
Larval carcass37 32 of 4 0.44Down
S2 cells (growing)64 14 of 4 0.77Down
Whole fly84 24 of 4

Looking for FBgn0050390. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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