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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050393 through 18771 annotations produced 1 hits



(CG30393):

Annotation Number : CG30393
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050393
Gbrowse : chr2R:17153867-17155084 (-) // 100.0 //
Probeset : 1631347_at
Accessions : protein= NP_726044;, nucleotide= NM_166433;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0050393.
BDGP gene expression has embryonic in situ data for CG30393: 4 pix of staining in 1 body parts.
BioGrid reports that CG30393 interacts with CG31919 .
VDRC has 2 RNAi stocks for FBgn0050393 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.00Down
Head7 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.02Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland16 ± 31 of 4 0.27Down
Crop4 ± 00 of 4 0.10Down
Midgut5 ± 10 of 4 0.10Down
Tubule3 ± 00 of 4 0.10Down
Hindgut3 ± 00 of 4 0.10Down
Heart3 ± 11 of 4 0.05Down
Fat body6 ± 10 of 4 0.11Down
Ovary2 ± 10 of 4 0.00Down
Testis915 ± 204 of 415.20Up
Male accessory glands4 ± 10 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.03Down
Mated spermatheca2 ± 10 of 4 0.03Down
Adult carcass9 ± 10 of 4 0.20Down
Larval CNS1 ± 10 of 4 0.02Down
Larval Salivary gland2 ± 10 of 4 0.04Down
Larval midgut2 ± 10 of 4 0.04Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.01Down
Larval fat body156 ± 964 of 4 2.60None
Larval trachea7 ± 71 of 4 0.12Down
Larval carcass2 ± 10 of 4 0.05Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly60 ± 24 of 4

Looking for FBgn0050393. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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