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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050394 through 18771 annotations produced 1 hits



(CG30394):

Annotation Number : CG30394
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050394
Gbrowse : chr2R:17207542-17211056 (-) // 100.0 //
Probeset : 1629537_s_at
Accessions : protein= NP_611578; /// NP_611579;, nucleotide= NM_137734; /// NM_137735;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0015171 // amino acid transmembrane transporter activity // inferred from sequence or structural similarity
FlyMine data for FBgn0050394.
BDGP gene expression has embryonic in situ data for CG30394: 12 pix of staining in 4 body parts.
VDRC has 1 RNAi stocks for FBgn0050394 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain96 14 of 4 1.10None
Head71 44 of 4 0.80None
Eye87 54 of 4 1.00None
Thoracicoabdominal ganglion81 24 of 4 0.90None
Salivary gland551 334 of 4 6.28Up
Crop91 54 of 4 1.00None
Midgut112 64 of 4 1.30None
Tubule144 54 of 4 1.70Up
Hindgut71 24 of 4 0.80None
Heart69 44 of 4 0.79None
Fat body54 34 of 4 0.62Down
Ovary201 64 of 4 2.30Up
Testis56 14 of 4 0.60Down
Male accessory glands128 44 of 4 1.50Up
Virgin spermatheca81 54 of 4 0.93None
Mated spermatheca81 74 of 4 0.93None
Adult carcass48 14 of 4 0.60Down
Larval CNS121 84 of 4 1.39Up
Larval Salivary gland1204 184 of 413.72Up
Larval midgut79 64 of 4 0.91None
Larval tubule131 44 of 4 1.50Up
Larval hindgut109 14 of 4 1.25None
Larval fat body54 74 of 4 0.60Down
Larval trachea113 164 of 4 1.29None
Larval carcass121 24 of 4 1.38Up
S2 cells (growing)237 74 of 4 2.70Up
Whole fly87 84 of 4

Looking for FBgn0050394. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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