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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050395 through 18771 annotations produced 1 hits



(CG30395):

Annotation Number : CG30395
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050395
Gbrowse : chr2R:17653036-17654095 (+) // 100.0 //
Probeset : 1623856_at
Accessions : protein= NP_726116;, nucleotide= NM_166486;
FlyMine data for FBgn0050395.
VDRC has 2 RNAi stocks for FBgn0050395 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye2 ± 00 of 4 0.04Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland7 ± 20 of 4 0.14Down
Crop2 ± 10 of 4 0.00Down
Midgut0 ± 00 of 4 0.00Down
Tubule5 ± 00 of 4 0.10Down
Hindgut5 ± 00 of 4 0.10Down
Heart3 ± 10 of 4 0.06Down
Fat body5 ± 30 of 4 0.11Down
Ovary2 ± 00 of 4 0.00Down
Testis21 ± 14 of 4 0.40Down
Male accessory glands2649 ± 3894 of 449.00Up
Virgin spermatheca4 ± 00 of 4 0.08Down
Mated spermatheca3 ± 10 of 4 0.06Down
Adult carcass5 ± 20 of 4 0.10Down
Larval CNS2 ± 10 of 4 0.04Down
Larval Salivary gland5 ± 10 of 4 0.10Down
Larval midgut2 ± 10 of 4 0.04Down
Larval tubule0 ± 00 of 4 0.00Down
Larval hindgut2 ± 00 of 4 0.05Down
Larval fat body6 ± 10 of 4 0.10Down
Larval trachea0 ± 00 of 4 0.01Down
Larval carcass3 ± 10 of 4 0.07Down
S2 cells (growing)1 ± 00 of 4 0.03Down
Whole fly54 ± 74 of 4

Looking for FBgn0050395. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime