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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0050398 through 18771 annotations produced 1 hits


Annotation Number : CG30398
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050398
Gbrowse : chr2R:17605337-17606239 (+) // 100.0 //
Probeset : 1631301_at
Accessions : protein= NP_726113;, nucleotide= NM_166483;
FlyMine data for FBgn0050398.
VDRC has 3 RNAi stocks for FBgn0050398 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.00Down
Head1 00 of 4 0.10Down
Eye2 10 of 4 0.17Down
Thoracicoabdominal ganglion2 10 of 4 0.10Down
Salivary gland12 40 of 4 0.74None
Crop1 00 of 4 0.10Down
Midgut0 00 of 4 0.00Down
Tubule1 00 of 4 0.10Down
Hindgut1 00 of 4 0.10Down
Heart0 00 of 4 0.04Down
Fat body2 20 of 4 0.13Down
Ovary0 00 of 4 0.00Down
Testis259 124 of 414.80Up
Male accessory glands3 20 of 4 0.20Down
Virgin spermatheca3 10 of 4 0.17Down
Mated spermatheca2 10 of 4 0.16Down
Adult carcass1 00 of 4 0.10Down
Larval CNS0 00 of 4 0.05Down
Larval Salivary gland8 00 of 4 0.48Down
Larval midgut1 00 of 4 0.06Down
Larval tubule0 00 of 4 0.10Down
Larval hindgut1 00 of 4 0.08Down
Larval fat body13 71 of 4 0.80None
Larval trachea2 30 of 4 0.14Down
Larval carcass0 00 of 4 0.04Down
S2 cells (growing)0 00 of 4 0.05Down
Whole fly17 13 of 4

Looking for FBgn0050398. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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