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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050403 through 18771 annotations produced 1 hits



(CG30403):

Annotation Number : CG30403
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050403
Gbrowse : chr2R:17596951-17599126 (-) // 100.0 //
Probeset : 1641573_at
Accessions : protein= NP_726108;, nucleotide= NM_166478;
Interpro : 0003677 // DNA binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical i
FlyMine data for FBgn0050403.
BDGP gene expression has embryonic in situ data for CG30403: 4 pix of staining in 1 body parts.
BioGrid reports that CG30403 interacts with CG5709 .
VDRC has 2 RNAi stocks for FBgn0050403 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 ± 22 of 4 0.80None
Head7 ± 21 of 4 0.50None
Eye5 ± 00 of 4 0.33Down
Thoracicoabdominal ganglion15 ± 22 of 4 1.00None
Salivary gland9 ± 20 of 4 0.60None
Crop10 ± 10 of 4 0.70None
Midgut4 ± 10 of 4 0.30Down
Tubule7 ± 00 of 4 0.50Down
Hindgut6 ± 10 of 4 0.40Down
Heart5 ± 11 of 4 0.37Down
Fat body9 ± 20 of 4 0.62None
Ovary19 ± 14 of 4 1.20None
Testis23 ± 13 of 4 1.50Up
Male accessory glands14 ± 61 of 4 0.90None
Virgin spermatheca7 ± 10 of 4 0.50None
Mated spermatheca11 ± 10 of 4 0.77None
Adult carcass6 ± 10 of 4 0.40Down
Larval CNS48 ± 84 of 4 3.14Up
Larval Salivary gland17 ± 10 of 4 1.10None
Larval midgut5 ± 20 of 4 0.33Down
Larval tubule12 ± 11 of 4 0.80None
Larval hindgut10 ± 10 of 4 0.68None
Larval fat body18 ± 10 of 4 1.20None
Larval trachea16 ± 23 of 4 1.04None
Larval carcass17 ± 20 of 4 1.10None
S2 cells (growing)17 ± 02 of 4 1.13None
Whole fly15 ± 24 of 4

Looking for FBgn0050403. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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