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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050404 through 18771 annotations produced 1 hits



anon-fast-evolving-1F11 (Tango11):

Annotation Number : CG30404
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050404
Gbrowse : chr2R:17604279-17607466 (-) // 100.0 //
Probeset : 1636789_s_at
Accessions : protein= NP_726111; /// NP_726112;, nucleotide= NM_166481; /// NM_166482;
Pathway : 0005783 // endoplasmic reticulum // inferred from direct assay /// 0005783 // endoplasmic reticulum // inferred from ele
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0050404.
BDGP gene expression has embryonic in situ data for CG30404: 10 pix of staining in 4 body parts.
BioGrid reports that CG30404 interacts with CG4069 CG7809 CG8982 CG3563 .
VDRC has 1 RNAi stocks for FBgn0050404 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain540 114 of 4 1.40Up
Head314 154 of 4 0.80Down
Eye424 274 of 4 1.14None
Thoracicoabdominal ganglion422 114 of 4 1.10Up
Salivary gland418 164 of 4 1.12None
Crop366 74 of 4 1.00None
Midgut323 84 of 4 0.90Down
Tubule405 144 of 4 1.10Up
Hindgut359 64 of 4 1.00None
Heart318 254 of 4 0.85None
Fat body354 54 of 4 0.95None
Ovary617 184 of 4 1.70Up
Testis393 114 of 4 1.10None
Male accessory glands342 114 of 4 0.90None
Virgin spermatheca246 84 of 4 0.66Down
Mated spermatheca216 34 of 4 0.58Down
Adult carcass296 114 of 4 0.80Down
Larval CNS526 284 of 4 1.41Up
Larval Salivary gland518 174 of 4 1.39Up
Larval midgut431 284 of 4 1.16None
Larval tubule670 144 of 4 1.80Up
Larval hindgut473 184 of 4 1.27Up
Larval fat body508 134 of 4 1.40Up
Larval trachea278 154 of 4 0.74Down
Larval carcass494 34 of 4 1.33Up
S2 cells (growing)501 134 of 4 1.34Up
Whole fly373 94 of 4

Looking for FBgn0050404. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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