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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050409 through 18771 annotations produced 1 hits



(CG30409):

Annotation Number : CG30409
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050409
Gbrowse : chr2R:19241997-19242755 (+) // 100.0 //
Probeset : 1638545_at
Accessions : protein= NP_611782;, nucleotide= NM_137938;
Pathway : non-oxidative branch // inferred from electronic annotation"
FlyMine data for FBgn0050409.
BioGrid reports that CG30409 interacts with CG7103 CG8998 .
VDRC has 1 RNAi stocks for FBgn0050409 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.30None
Head3 ± 10 of 4 0.30Down
Eye2 ± 10 of 4 0.22Down
Thoracicoabdominal ganglion3 ± 20 of 4 0.30None
Salivary gland4 ± 20 of 4 0.40None
Crop1 ± 00 of 4 0.20Down
Midgut4 ± 10 of 4 0.40None
Tubule1 ± 00 of 4 0.10Down
Hindgut2 ± 10 of 4 0.20Down
Heart1 ± 10 of 4 0.18Down
Fat body3 ± 10 of 4 0.29Down
Ovary6 ± 11 of 4 0.60None
Testis32 ± 14 of 4 3.00Up
Male accessory glands4 ± 20 of 4 0.40None
Virgin spermatheca0 ± 00 of 4 0.09Down
Mated spermatheca2 ± 00 of 4 0.19Down
Adult carcass6 ± 20 of 4 0.60None
Larval CNS3 ± 10 of 4 0.33Down
Larval Salivary gland2 ± 00 of 4 0.22Down
Larval midgut1 ± 00 of 4 0.16Down
Larval tubule2 ± 00 of 4 0.20Down
Larval hindgut4 ± 10 of 4 0.40None
Larval fat body11 ± 41 of 4 1.10None
Larval trachea2 ± 20 of 4 0.24Down
Larval carcass8 ± 10 of 4 0.78None
S2 cells (growing)2 ± 00 of 4 0.27Down
Whole fly10 ± 22 of 4

Looking for FBgn0050409. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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