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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050410 through 18771 annotations produced 1 hits



(CG30410):

Annotation Number : CG30410
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050410
Gbrowse : chr2R:19242751-19243717 (+) // 99.59 //
Probeset : 1627655_at
Accessions : protein= NP_726309;, nucleotide= NM_166594;
Pathway : non-oxidative branch // inferred from electronic annotation"
FlyMine data for FBgn0050410.
Homophila reports that CG30410 is a close match (5e-77) to human gene RPI;RPIA (NP_653164), a gene associated with Ribose 5-phosphate isomerase deficiency, 608611 (3).
VDRC has 3 RNAi stocks for FBgn0050410 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain87 ± 34 of 4 0.30Down
Head190 ± 224 of 4 0.70None
Eye157 ± 114 of 4 0.59Down
Thoracicoabdominal ganglion93 ± 34 of 4 0.30Down
Salivary gland362 ± 164 of 4 1.35None
Crop440 ± 124 of 4 1.60Up
Midgut220 ± 124 of 4 0.80None
Tubule729 ± 434 of 4 2.70Up
Hindgut406 ± 144 of 4 1.50Up
Heart554 ± 164 of 4 2.06Up
Fat body611 ± 194 of 4 2.27Up
Ovary307 ± 54 of 4 1.10None
Testis324 ± 54 of 4 1.20None
Male accessory glands542 ± 104 of 4 2.00Up
Virgin spermatheca372 ± 264 of 4 1.38None
Mated spermatheca274 ± 274 of 4 1.02None
Adult carcass501 ± 414 of 4 1.90Up
Larval CNS355 ± 154 of 4 1.32None
Larval Salivary gland367 ± 214 of 4 1.37None
Larval midgut157 ± 34 of 4 0.59Down
Larval tubule277 ± 164 of 4 1.00None
Larval hindgut184 ± 124 of 4 0.69None
Larval fat body342 ± 404 of 4 1.30None
Larval trachea292 ± 164 of 4 1.09None
Larval carcass362 ± 264 of 4 1.35None
S2 cells (growing)426 ± 144 of 4 1.58Up
Whole fly269 ± 344 of 4

Looking for FBgn0050410. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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