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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050411 through 18771 annotations produced 1 hits



(CG30411):

Annotation Number : CG30411
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050411
Gbrowse : chr2R:19303467-19304761 (+) // 100.0 //
Probeset : 1623744_at
Accessions : protein= NP_726325;, nucleotide= NM_166605;
FlyMine data for FBgn0050411.
BDGP gene expression has embryonic in situ data for CG30411: 4 pix of staining in 1 body parts.
VDRC has 2 RNAi stocks for FBgn0050411 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head6 ± 00 of 4 0.30Down
Eye0 ± 00 of 4 0.05Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland634 ± 324 of 433.90Up
Crop7 ± 10 of 4 0.40Down
Midgut213 ± 214 of 411.40Up
Tubule254 ± 264 of 413.60Up
Hindgut52 ± 74 of 4 2.80Up
Heart1 ± 00 of 4 0.08Down
Fat body1 ± 10 of 4 0.10Down
Ovary0 ± 00 of 4 0.00Down
Testis0 ± 00 of 4 0.00Down
Male accessory glands8 ± 21 of 4 0.50Down
Virgin spermatheca92 ± 84 of 4 4.92Up
Mated spermatheca121 ± 114 of 4 6.48Up
Adult carcass4 ± 00 of 4 0.20Down
Larval CNS0 ± 00 of 4 0.03Down
Larval Salivary gland211 ± 454 of 411.29Up
Larval midgut51 ± 114 of 4 2.76None
Larval tubule15 ± 22 of 4 0.80None
Larval hindgut26 ± 44 of 4 1.41None
Larval fat body19 ± 21 of 4 1.00None
Larval trachea3 ± 21 of 4 0.18Down
Larval carcass1 ± 00 of 4 0.09Down
S2 cells (growing)0 ± 00 of 4 0.03Down
Whole fly18 ± 14 of 4

Looking for FBgn0050411. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime