FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for FBGN0050413 through 18771 annotations produced 1 hits

(CG30413):

Annotation Number : CG30413
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050413
Gbrowse : chr2R:19217179-19217548 (-) // 100.0 //
Probeset : 1635380_at
Accessions : protein= NP_726308;, nucleotide= NM_166593;
FlyMine data for FBgn0050413.
VDRC has 2 RNAi stocks for FBgn0050413 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	2 ± 1	0 of 4	0.10	Down
Head	1 ± 0	0 of 4	0.00	Down
Eye	2 ± 1	0 of 4	0.09	Down
Thoracicoabdominal ganglion	4 ± 1	0 of 4	0.10	Down
Salivary gland	13 ± 3	0 of 4	0.45	None
Crop	10 ± 1	1 of 4	0.30	Down
Midgut	8 ± 1	0 of 4	0.30	Down
Tubule	5 ± 0	0 of 4	0.20	Down
Hindgut	4 ± 1	0 of 4	0.10	Down
Heart	5 ± 1	1 of 4	0.17	Down
Fat body	9 ± 2	1 of 4	0.30	Down
Ovary	3 ± 1	0 of 4	0.10	Down
Testis	7 ± 1	0 of 4	0.20	Down
Male accessory glands	8 ± 2	1 of 4	0.30	Down
Virgin spermatheca	2 ± 1	0 of 4	0.07	Down
Mated spermatheca	4 ± 0	0 of 4	0.13	Down
Adult carcass	8 ± 3	0 of 4	0.30	Down
Larval CNS	4 ± 2	0 of 4	0.15	Down
Larval Salivary gland	6 ± 1	0 of 4	0.22	Down
Larval midgut	141 ± 6	4 of 4	4.64	Up
Larval tubule	4 ± 1	0 of 4	0.10	Down
Larval hindgut	9 ± 0	0 of 4	0.30	Down
Larval fat body	4 ± 1	0 of 4	0.20	Down
Larval trachea	5 ± 1	0 of 4	0.17	Down
Larval carcass	3 ± 0	0 of 4	0.11	Down
S2 cells (growing)	7 ± 1	0 of 4	0.26	Down
Whole fly	30 ± 6	4 of 4

Looking for FBgn0050413. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720