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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050418 through 18771 annotations produced 1 hits



/// /// nord (CG13575 /// DmirCG13575 /// nord):

Annotation Number : CG30418
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034996 /// FBgn0050418
Gbrowse : chr2R:20130785-20142616 (+) // 100.0 //
Probeset : 1636742_at
Accessions : protein= NP_611900;, nucleotide= NM_138056;
Pathway : 0016021 // integral to membrane // inferred from electronic annotation
Interpro : "0004871 // signal transducer activity // inferred from electronic annotation /// 0004872 // receptor activity // inferr
FlyMine data for FBgn0034996 /// FBgn0050418.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain260 94 of 4 8.70Up
Head61 34 of 4 2.00Up
Eye7 02 of 4 0.26Down
Thoracicoabdominal ganglion873 364 of 429.10Up
Salivary gland11 40 of 4 0.39Down
Crop3 10 of 4 0.10Down
Midgut4 10 of 4 0.10Down
Tubule4 10 of 4 0.20Down
Hindgut5 10 of 4 0.20Down
Heart10 04 of 4 0.36Down
Fat body7 10 of 4 0.24Down
Ovary24 14 of 4 0.80None
Testis23 24 of 4 0.80None
Male accessory glands5 10 of 4 0.20Down
Virgin spermatheca5 01 of 4 0.20Down
Mated spermatheca8 02 of 4 0.27Down
Adult carcass14 21 of 4 0.50Down
Larval CNS183 184 of 4 6.12Up
Larval Salivary gland5 10 of 4 0.19Down
Larval midgut6 10 of 4 0.23Down
Larval tubule2 10 of 4 0.10Down
Larval hindgut6 01 of 4 0.22Down
Larval fat body15 12 of 4 0.50Down
Larval trachea6 12 of 4 0.22Down
Larval carcass25 14 of 4 0.83None
S2 cells (growing)1 00 of 4 0.06Down
Whole fly30 24 of 4

Looking for FBgn0050418. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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