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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050424 through 18771 annotations produced 1 hits



(CG30424):

Annotation Number : CG30424
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050424
Gbrowse : chr2R:20853078-20854808 (-) // 100.0 //
Probeset : 1628503_at
Accessions : protein= NP_001097453; /// NP_001097454; /// NP_001097455;, nucleotide= NM_001103983; /// NM_001103984; /// NM_001103985;
FlyMine data for FBgn0050424.
VDRC has 1 RNAi stocks for FBgn0050424 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain50 14 of 4 1.40Up
Head26 10 of 4 0.70Down
Eye6 20 of 4 0.18Down
Thoracicoabdominal ganglion61 34 of 4 1.70Up
Salivary gland9 30 of 4 0.27Down
Crop7 30 of 4 0.20Down
Midgut233 44 of 4 6.40Up
Tubule356 164 of 4 9.70Up
Hindgut64 24 of 4 1.80Up
Heart40 34 of 4 1.11None
Fat body75 114 of 4 2.05Up
Ovary4 00 of 4 0.10Down
Testis25 34 of 4 0.70Down
Male accessory glands2 00 of 4 0.10Down
Virgin spermatheca47 23 of 4 1.31Up
Mated spermatheca38 13 of 4 1.05None
Adult carcass44 12 of 4 1.20Up
Larval CNS8 10 of 4 0.23Down
Larval Salivary gland8 10 of 4 0.23Down
Larval midgut93 34 of 4 2.55Up
Larval tubule306 204 of 4 8.40Up
Larval hindgut40 21 of 4 1.09None
Larval fat body137 174 of 4 3.80Up
Larval trachea4 30 of 4 0.12Down
Larval carcass6 20 of 4 0.17Down
S2 cells (growing)40 20 of 4 1.11None
Whole fly36 03 of 4

Looking for FBgn0050424. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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