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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050428 through 18771 annotations produced 1 hits



(CG30428):

Annotation Number : CG30428
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050428
Gbrowse : chr2R:21140836-21142000 (+) // 100.0 //
Probeset : 1634124_at
Accessions : protein= NP_726513;, nucleotide= NM_166709;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0050428.
BioGrid reports that CG30428 interacts with CG3923 CG7238 .
VDRC has 2 RNAi stocks for FBgn0050428 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain157 ± 144 of 4 3.20Up
Head59 ± 14 of 4 1.20None
Eye90 ± 44 of 4 1.86Up
Thoracicoabdominal ganglion94 ± 144 of 4 1.90Up
Salivary gland63 ± 54 of 4 1.30None
Crop97 ± 24 of 4 2.00Up
Midgut97 ± 44 of 4 2.00Up
Tubule76 ± 24 of 4 1.60Up
Hindgut67 ± 34 of 4 1.40Up
Heart115 ± 44 of 4 2.37Up
Fat body98 ± 74 of 4 2.01Up
Ovary12 ± 14 of 4 0.30Down
Testis268 ± 104 of 4 5.50Up
Male accessory glands68 ± 54 of 4 1.40Up
Virgin spermatheca89 ± 44 of 4 1.82Up
Mated spermatheca105 ± 14 of 4 2.17Up
Adult carcass56 ± 64 of 4 1.20None
Larval CNS84 ± 84 of 4 1.72Up
Larval Salivary gland104 ± 64 of 4 2.14Up
Larval midgut97 ± 64 of 4 1.99Up
Larval tubule141 ± 74 of 4 2.90Up
Larval hindgut92 ± 44 of 4 1.89Up
Larval fat body223 ± 104 of 4 4.60Up
Larval trachea134 ± 84 of 4 2.76Up
Larval carcass84 ± 44 of 4 1.72Up
S2 cells (growing)83 ± 04 of 4 1.71Up
Whole fly48 ± 54 of 4

Looking for FBgn0050428. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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