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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050430 through 18771 annotations produced 1 hits



(CG30430):

Annotation Number : CG30430
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050430
Gbrowse : chr2R:21016954-21017435 (+) // 100.0 //
Probeset : 1637812_at
Accessions : protein= NP_726509;, nucleotide= NM_166706;
FlyMine data for FBgn0050430.
BioGrid reports that CG30430 interacts with CG3858 CG5272 CG7835 .
VDRC has 2 RNAi stocks for FBgn0050430 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.00Down
Head4 ± 10 of 4 0.00Down
Eye1 ± 00 of 4 0.00Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland20 ± 40 of 4 0.03Down
Crop8 ± 20 of 4 0.00Down
Midgut9 ± 11 of 4 0.00Down
Tubule8 ± 10 of 4 0.00Down
Hindgut3 ± 10 of 4 0.00Down
Heart5 ± 00 of 4 0.01Down
Fat body3 ± 20 of 4 0.00Down
Ovary2 ± 00 of 4 0.00Down
Testis2973 ± 444 of 4 4.50Up
Male accessory glands10 ± 11 of 4 0.00Down
Virgin spermatheca5 ± 00 of 4 0.01Down
Mated spermatheca9 ± 21 of 4 0.02Down
Adult carcass22 ± 101 of 4 0.00Down
Larval CNS1 ± 00 of 4 0.00Down
Larval Salivary gland7 ± 20 of 4 0.01Down
Larval midgut9 ± 00 of 4 0.01Down
Larval tubule6 ± 00 of 4 0.00Down
Larval hindgut4 ± 00 of 4 0.01Down
Larval fat body227 ± 794 of 4 0.30Down
Larval trachea24 ± 302 of 4 0.04Down
Larval carcass9 ± 12 of 4 0.01Down
S2 cells (growing)3 ± 00 of 4 0.01Down
Whole fly656 ± 314 of 4

Looking for FBgn0050430. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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