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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050431 through 18771 annotations produced 1 hits



(CG30431):

Annotation Number : CG30431
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050431
Gbrowse : chr2R:2090247-2092708 (+) // 100.0 //
Probeset : 1635271_at
Accessions : protein= NP_610211;, nucleotide= NM_136367;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding /
FlyMine data for FBgn0050431.
Homophila reports that CG30431 is a close match (9e-11) to human gene GLI2;HPE9 (NP_005261), a gene associated with Holoprosencephaly-9, 610829 (3);Pituitary anomalies with holoprosencephaly-like features (3).
BioGrid reports that CG30431 interacts with CG5119 .
VDRC has 2 RNAi stocks for FBgn0050431 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain11 12 of 4 0.10Down
Head181 214 of 4 2.30Up
Eye27 44 of 4 0.35Down
Thoracicoabdominal ganglion12 22 of 4 0.20Down
Salivary gland10 30 of 4 0.13Down
Crop9 20 of 4 0.10Down
Midgut6 10 of 4 0.10Down
Tubule8 10 of 4 0.10Down
Hindgut17 23 of 4 0.20Down
Heart125 134 of 4 1.61Up
Fat body278 294 of 4 3.58Up
Ovary4 00 of 4 0.10Down
Testis214 84 of 4 2.80Up
Male accessory glands6 10 of 4 0.10Down
Virgin spermatheca242 74 of 4 3.12Up
Mated spermatheca242 284 of 4 3.12Up
Adult carcass162 84 of 4 2.10Up
Larval CNS4 21 of 4 0.06Down
Larval Salivary gland9 10 of 4 0.12Down
Larval midgut7 10 of 4 0.10Down
Larval tubule21 23 of 4 0.30Down
Larval hindgut8 11 of 4 0.11Down
Larval fat body333 234 of 4 4.30Up
Larval trachea8 30 of 4 0.11Down
Larval carcass11 00 of 4 0.15Down
S2 cells (growing)32 04 of 4 0.42Down
Whole fly77 94 of 4

Looking for FBgn0050431. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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