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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for FBGN0050432 through 18771 annotations produced 1 hits


(CG30432):

Annotation Number : CG30432
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050432
Gbrowse : chr2R:2085103-2085847 (-) // 100.0 //
Probeset : 1632083_at
Accessions : protein= NP_724464;, nucleotide= NM_165467;
FlyMine data for FBgn0050432.
VDRC has 3 RNAi stocks for FBgn0050432 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.10Down
Head0 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.08Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.10Down
Salivary gland3 ± 00 of 4 0.25Down
Crop1 ± 00 of 4 0.10Down
Midgut1 ± 00 of 4 0.10Down
Tubule1 ± 00 of 4 0.10Down
Hindgut1 ± 00 of 4 0.10Down
Heart1 ± 00 of 4 0.06Down
Fat body2 ± 00 of 4 0.16Down
Ovary2 ± 00 of 4 0.10Down
Testis300 ± 94 of 419.50Up
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.07Down
Mated spermatheca1 ± 00 of 4 0.06Down
Adult carcass2 ± 00 of 4 0.20Down
Larval CNS1 ± 10 of 4 0.09Down
Larval Salivary gland1 ± 00 of 4 0.12Down
Larval midgut1 ± 00 of 4 0.08Down
Larval tubule1 ± 00 of 4 0.10Down
Larval hindgut1 ± 00 of 4 0.09Down
Larval fat body50 ± 272 of 4 3.20None
Larval trachea1 ± 00 of 4 0.08Down
Larval carcass2 ± 00 of 4 0.13Down
S2 cells (growing)0 ± 00 of 4 0.06Down
Whole fly15 ± 12 of 4

Looking for FBgn0050432. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime