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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for FBGN0050438 through 18771 annotations produced 1 hits



(CG30438):

Annotation Number : CG30438
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0050438
Gbrowse : chr2R:1384183-1437059 (+) // 100.0 //
Probeset : 1639147_s_at
Accessions : protein= NP_724416; /// NP_724417; /// NP_724418; /// NP_724419;, nucleotide= NM_165435; /// NM_165436; /// NM_165437; /// NM_165438;
Interpro : "0016740 // transferase activity // inferred from electronic annotation /// 0016757 // transferase activity
FlyMine data for FBgn0050438.
BDGP gene expression has embryonic in situ data for CG30438: 19 pix of staining in 7 body parts.
Homophila reports that CG30438 is a close match (3e-46) to human gene GNT1;UGT1;UGT1A1 (NP_000454), a gene associated with Crigler-Najjar syndrome, type I, 218800 (3);Crigler-Najjar syndrome, type II, 606785 (3);Hyperbilirubinemia, familial transcient neonatal, 237900 (3);[Gilbert syndrome], 143500 (3).
VDRC has 3 RNAi stocks for FBgn0050438 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 12 of 4 0.00Down
Head27 24 of 4 0.30None
Eye9 04 of 4 0.12Down
Thoracicoabdominal ganglion7 02 of 4 0.10Down
Salivary gland15 41 of 4 0.19Down
Crop5 01 of 4 0.10Down
Midgut2 01 of 4 0.00Down
Tubule3 00 of 4 0.00Down
Hindgut16 24 of 4 0.20Down
Heart5 13 of 4 0.07Down
Fat body12 44 of 4 0.16Down
Ovary7 14 of 4 0.10Down
Testis8 52 of 4 0.10Down
Male accessory glands2427 2654 of 430.60Up
Virgin spermatheca50 84 of 4 0.63None
Mated spermatheca61 44 of 4 0.78None
Adult carcass13 41 of 4 0.20Down
Larval CNS5 23 of 4 0.06Down
Larval Salivary gland3 00 of 4 0.04Down
Larval midgut6 04 of 4 0.08Down
Larval tubule4 00 of 4 0.10Down
Larval hindgut9 14 of 4 0.11Down
Larval fat body7 22 of 4 0.10Down
Larval trachea47 44 of 4 0.59None
Larval carcass60 64 of 4 0.76None
S2 cells (growing)5 03 of 4 0.07Down
Whole fly79 174 of 4

Looking for FBgn0050438. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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